Wall clock time and date at job start Mon Mar 30 2020 02:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38664 * 119.75207 * 2 1 4 4 C 1.38031 * 120.41721 * 179.97438 * 3 2 1 5 5 C 1.38637 * 119.84540 * 359.79514 * 4 3 2 6 6 C 1.40497 * 119.96898 * 0.47200 * 5 4 3 7 7 C 1.37787 * 119.75054 * 180.02562 * 2 1 3 8 8 N 1.36038 * 107.14709 * 179.71487 * 6 5 4 9 9 C 1.30701 * 109.69760 * 359.77635 * 8 6 5 10 10 O 1.35288 * 125.06352 * 179.97438 * 9 8 6 11 11 N 1.36948 * 109.87107 * 0.02562 * 9 8 6 12 12 C 1.37375 * 126.41854 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00351 * 211.80455 * 12 11 9 14 14 C 1.38870 * 119.99612 * 31.51618 * 12 11 9 15 15 N 1.31416 * 119.99970 * 19.84145 * 14 12 11 16 16 Si 1.86793 * 120.00013 * 199.83961 * 14 12 11 17 17 H 1.48500 * 109.47227 * 90.00231 * 16 14 12 18 18 H 1.48498 * 109.47195 * 210.00381 * 16 14 12 19 19 H 1.48508 * 109.47438 * 330.00130 * 16 14 12 20 20 H 1.09007 * 109.46994 * 269.97750 * 1 2 3 21 21 H 1.09001 * 109.47470 * 29.97143 * 1 2 3 22 22 H 1.09002 * 109.47433 * 149.97632 * 1 2 3 23 23 H 1.07995 * 119.79272 * 0.02562 * 3 2 1 24 24 H 1.08004 * 120.07593 * 180.02562 * 4 3 2 25 25 H 1.07997 * 120.10570 * 0.02562 * 7 2 1 26 26 H 0.96705 * 113.99997 * 270.02372 * 10 9 8 27 27 H 0.97003 * 120.00425 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.2039 0.0000 4 6 3.5753 1.2199 0.0005 5 6 4.2791 0.0255 0.0054 6 6 3.5869 -1.1971 -0.0003 7 6 2.1907 -1.1963 -0.0005 8 7 4.5205 -2.1866 -0.0001 9 6 5.7178 -1.6626 0.0004 10 8 6.8738 -2.3654 0.0012 11 7 5.6279 -0.2961 0.0011 12 6 6.6774 0.5903 0.0023 13 1 6.5768 1.5457 0.4957 14 6 7.8698 0.2554 -0.6258 15 7 7.8901 -0.6953 -1.5329 16 14 9.4447 1.1561 -0.1814 17 1 10.1219 0.4480 0.9344 18 1 10.3440 1.1930 -1.3626 19 1 9.1203 2.5436 0.2372 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5142 23 1 1.6477 2.1348 0.0004 24 1 4.1057 2.1607 0.0009 25 1 1.6484 -2.1302 -0.0014 26 1 7.2092 -2.5699 0.8848 27 1 8.7229 -0.9290 -1.9720 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108267629.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:43 Heat of formation + Delta-G solvation = 6.518937 kcal Electronic energy + Delta-G solvation = -14254.154695 eV Core-core repulsion = 11783.999652 eV Total energy + Delta-G solvation = -2470.155043 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.58920 -38.90178 -37.23012 -35.82882 -33.50947 -32.16566 -30.06987 -27.70609 -26.40512 -23.53317 -22.35641 -21.95908 -20.11897 -18.40344 -17.93359 -17.08509 -16.69759 -16.11533 -15.49091 -14.85687 -14.78251 -14.55708 -14.02130 -13.76931 -13.23389 -13.14894 -12.90363 -12.67922 -12.34751 -12.21014 -11.85073 -11.77702 -11.53756 -10.71939 -10.57778 -9.00533 -8.77009 -8.63223 -6.45060 0.24825 0.84825 1.35979 1.40460 1.52222 1.98176 2.04753 2.42325 2.83721 3.13358 3.35014 4.01742 4.21914 4.44548 4.58357 4.76825 4.77462 4.90624 5.03932 5.05524 5.21492 5.28560 5.42540 5.66780 5.85389 5.88162 6.16209 6.27043 6.53046 6.78735 7.31261 7.52172 8.37629 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.046764 B = 0.009340 C = 0.008052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.608458 B = 2997.190674 C = 3476.446270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.099 4.099 5 C -0.030 4.030 6 C 0.022 3.978 7 C -0.099 4.099 8 N -0.567 5.567 9 C 0.399 3.601 10 O -0.428 6.428 11 N -0.306 5.306 12 C -0.398 4.398 13 H 0.111 0.889 14 C 0.019 3.981 15 N -0.839 5.839 16 Si 1.012 2.988 17 H -0.261 1.261 18 H -0.275 1.275 19 H -0.255 1.255 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.158 0.842 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.392 0.608 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 4.383 4.050 8.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 C -0.143 4.143 4 C -0.120 4.120 5 C -0.144 4.144 6 C -0.102 4.102 7 C -0.119 4.119 8 N -0.302 5.302 9 C 0.100 3.900 10 O -0.226 6.226 11 N 0.012 4.988 12 C -0.525 4.525 13 H 0.129 0.871 14 C -0.193 4.193 15 N -0.467 5.467 16 Si 0.831 3.169 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.179 1.179 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.087 0.913 23 H 0.176 0.824 24 H 0.137 0.863 25 H 0.146 0.854 26 H 0.247 0.753 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.694 3.435 3.264 7.408 hybrid contribution 1.610 0.661 0.330 1.772 sum -4.084 4.096 3.594 6.810 Atomic orbital electron populations 1.20704 0.87932 1.03545 1.03081 1.19913 0.97676 0.91387 1.01274 1.20956 0.91543 0.98812 1.02994 1.20142 0.94662 0.94126 1.03061 1.19424 0.84515 0.97863 1.12561 1.19228 0.94858 0.88298 1.07832 1.20163 0.88780 0.99054 1.03907 1.70394 0.97443 1.31595 1.30764 1.20374 0.86242 0.79696 1.03661 1.84885 1.34261 1.71039 1.32444 1.42022 1.04372 1.05823 1.46616 1.20085 0.91335 1.01814 1.39304 0.87098 1.26599 1.03240 0.97186 0.92250 1.70042 1.29855 1.28394 1.18397 0.84694 0.75011 0.78782 0.78377 1.18531 1.19970 1.17877 0.90175 0.89916 0.91258 0.82422 0.86316 0.85409 0.75280 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.11 10.00 71.23 0.71 -1.39 15 2 C -0.10 -3.30 5.88 -19.87 -0.12 -3.42 15 3 C -0.12 -4.13 9.68 22.32 0.22 -3.92 15 4 C -0.10 -4.21 10.01 22.32 0.22 -3.99 15 5 C -0.03 -1.56 6.81 38.71 0.26 -1.29 15 6 C 0.02 1.11 7.22 39.38 0.28 1.40 15 7 C -0.10 -4.04 9.73 22.50 0.22 -3.82 15 8 N -0.57 -31.41 11.30 -306.02 -3.46 -34.87 15 9 C 0.40 22.31 8.27 179.59 1.49 23.79 15 10 O -0.43 -21.87 11.00 -85.73 -0.94 -22.82 15 11 N -0.31 -17.07 2.90 -457.60 -1.33 -18.40 15 12 C -0.40 -21.28 9.94 83.98 0.83 -20.44 15 13 H 0.11 5.59 7.90 -2.91 -0.02 5.57 15 14 C 0.02 0.96 4.88 84.91 0.41 1.37 15 15 N -0.84 -45.98 11.05 21.65 0.24 -45.74 15 16 Si 1.01 38.22 29.59 68.60 2.03 40.25 15 17 H -0.26 -9.40 7.11 99.48 0.71 -8.70 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 19 H -0.26 -9.14 7.11 99.48 0.71 -8.43 15 20 H 0.08 1.51 8.14 -2.38 -0.02 1.49 15 21 H 0.08 1.47 8.08 -2.39 -0.02 1.45 15 22 H 0.07 1.41 8.08 -2.39 -0.02 1.39 15 23 H 0.16 3.88 8.06 -2.91 -0.02 3.86 15 24 H 0.12 4.69 8.06 -2.91 -0.02 4.67 15 25 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 26 H 0.39 15.71 9.06 -74.05 -0.67 15.04 15 27 H 0.29 14.44 8.31 -92.71 -0.77 13.67 15 Total: -1.00 -69.69 243.32 1.61 -68.09 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.53 Total: 25.21 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.54 Total: -11.72 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -4.55 Total: -99.01 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.94 Total: -22.82 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -69.69 1.61 -68.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108267629.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.608 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds