Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52583 * 109.24405 * 295.56238 * 10 9 7 12 12 C 1.53049 * 109.97728 * 169.67280 * 11 10 9 13 13 S 1.81672 * 108.96611 * 63.70794 * 12 11 10 14 14 O 1.42100 * 108.66151 * 191.35458 * 13 12 11 15 15 O 1.42092 * 108.74885 * 60.04280 * 13 12 11 16 16 C 1.81670 * 101.30540 * 305.68014 * 13 12 11 17 17 C 1.52581 * 109.24103 * 174.44561 * 10 9 7 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09003 * 109.23299 * 55.00569 * 10 9 7 22 22 H 1.09002 * 109.38725 * 289.87078 * 11 10 9 23 23 H 1.09005 * 109.39046 * 49.55436 * 11 10 9 24 24 H 1.08999 * 109.58468 * 303.84931 * 12 11 10 25 25 H 1.09000 * 109.63033 * 183.58926 * 12 11 10 26 26 H 1.09006 * 109.54969 * 294.44253 * 16 13 12 27 27 H 1.08996 * 109.62830 * 174.20606 * 16 13 12 28 28 H 1.09002 * 109.38761 * 310.44586 * 17 10 9 29 29 H 1.08997 * 109.38579 * 70.23480 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.0447 -3.6404 -1.3001 12 6 4.2106 -4.6280 -1.2134 13 16 3.5476 -6.3111 -1.0464 14 8 4.6124 -7.1873 -0.7035 15 8 2.7469 -6.6015 -2.1838 16 6 2.4607 -6.1241 0.3972 17 6 1.4824 -4.9760 0.1389 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.9274 -3.5514 0.8426 22 1 2.3945 -3.9190 -2.1294 23 1 3.4336 -2.6362 -1.4690 24 1 4.8266 -4.3909 -0.3460 25 1 4.8145 -4.5620 -2.1185 26 1 3.0610 -5.9004 1.2792 27 1 1.9049 -7.0476 0.5591 28 1 0.7835 -4.9019 0.9721 29 1 0.9303 -5.1730 -0.7800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214494820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -96.059131 kcal Electronic energy + Delta-G solvation = -13284.651875 eV Core-core repulsion = 10913.199914 eV Total energy + Delta-G solvation = -2371.451961 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.53735 -36.61769 -35.84925 -32.90209 -31.53209 -29.65638 -25.60282 -23.26337 -22.25503 -19.64432 -18.62920 -16.70997 -16.31013 -16.10254 -15.47710 -14.68871 -14.10950 -13.77657 -13.47697 -12.88825 -12.85229 -12.15547 -11.95706 -11.84801 -11.55589 -11.41438 -11.37869 -10.96048 -10.67225 -10.62678 -10.36200 -9.92132 -9.70735 -9.37830 -9.08886 -8.44011 -6.08549 -4.11351 0.24168 2.85056 3.26017 3.33371 3.35075 3.81344 4.16140 4.38272 4.83144 4.86888 4.97765 5.11066 5.28052 5.39302 5.55696 5.68337 5.90443 6.02359 6.21278 6.32849 6.70142 6.80619 6.90908 7.55132 7.66641 7.89564 8.30237 8.94604 9.53197 11.02603 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059270 B = 0.007447 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.297986 B = 3759.209239 C = 3973.127240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.103 4.103 11 C -0.101 4.101 12 C -0.594 4.594 13 S 2.410 3.590 14 O -0.960 6.960 15 O -0.944 6.944 16 C -0.597 4.597 17 C -0.107 4.107 18 H 0.261 0.739 19 H 0.022 0.978 20 H 0.021 0.979 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.083 0.917 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -9.019 0.089 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.139 4.139 12 C -0.725 4.725 13 S 2.594 3.406 14 O -0.957 6.957 15 O -0.941 6.941 16 C -0.727 4.727 17 C -0.145 4.145 18 H 0.071 0.929 19 H 0.040 0.960 20 H 0.040 0.960 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.119 0.881 24 H 0.147 0.853 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.102 0.898 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.546 -9.679 -0.427 11.164 hybrid contribution 0.361 1.627 0.582 1.765 sum 5.907 -8.053 0.155 9.988 Atomic orbital electron populations 1.69948 1.06064 1.26743 1.50463 1.25009 0.94812 0.99245 0.95250 0.86628 0.79836 0.83593 0.78143 1.20640 1.21244 1.19907 1.21224 0.93012 0.90866 1.50991 0.92409 1.19121 0.93421 0.90493 0.97846 1.21409 0.98743 0.95395 0.96569 1.21396 0.93245 1.00050 0.99217 1.30192 1.10082 1.21208 1.10997 1.08130 0.76684 0.78131 0.77655 1.93546 1.54689 1.62648 1.84848 1.93558 1.69673 1.83348 1.47542 1.30183 1.14505 1.08152 1.19863 1.21472 0.97289 0.91778 1.04002 0.92900 0.95971 0.96044 0.91293 0.90614 0.88112 0.85318 0.85560 0.85301 0.85651 0.89817 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.52 -13.58 8.24 -34.44 -0.28 -13.86 15 8 H 0.06 1.44 7.07 -52.48 -0.37 1.07 15 9 C 0.03 0.66 4.42 -27.88 -0.12 0.53 15 10 C -0.10 -1.80 1.89 -91.04 -0.17 -1.97 15 11 C -0.10 -1.63 4.95 -26.92 -0.13 -1.76 15 12 C -0.59 -7.48 6.35 37.18 0.24 -7.25 15 13 S 2.41 31.91 5.30 -107.50 -0.57 31.34 15 14 O -0.96 -15.11 18.10 -57.82 -1.05 -16.16 15 15 O -0.94 -15.60 17.95 -57.82 -1.04 -16.64 15 16 C -0.60 -7.03 6.35 37.18 0.24 -6.80 15 17 C -0.11 -1.58 5.02 -26.93 -0.14 -1.71 15 18 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 19 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 20 H 0.02 0.53 8.08 -51.93 -0.42 0.11 15 21 H 0.07 1.15 8.09 -51.93 -0.42 0.73 15 22 H 0.08 1.22 8.01 -51.93 -0.42 0.80 15 23 H 0.10 1.78 6.63 -51.93 -0.34 1.44 15 24 H 0.13 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.13 1.37 8.14 -51.93 -0.42 0.95 15 26 H 0.13 1.28 8.14 -51.92 -0.42 0.86 15 27 H 0.13 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.08 1.21 8.05 -51.93 -0.42 0.79 15 29 H 0.08 1.16 8.01 -51.93 -0.42 0.74 15 LS Contribution 251.15 15.07 3.78 3.78 Total: -1.00 -32.56 251.15 -7.68 -40.24 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.05 Total: -1.96 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: -0.47 Total: -31.33 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.96 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -2.08 Total: -32.80 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 31.91 SS G_CDS: -0.57 Total: 31.34 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.56 -7.68 -40.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214494820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.815 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds