Wall clock time and date at job start Mon Mar 30 2020 02:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52583 * 109.24405 * 295.56238 * 10 9 7 12 12 C 1.53049 * 109.97728 * 169.67280 * 11 10 9 13 13 S 1.81672 * 108.96611 * 63.70794 * 12 11 10 14 14 O 1.42100 * 108.66151 * 191.35458 * 13 12 11 15 15 O 1.42092 * 108.74885 * 60.04280 * 13 12 11 16 16 C 1.81670 * 101.30540 * 305.68014 * 13 12 11 17 17 C 1.52581 * 109.24103 * 174.44561 * 10 9 7 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 21 21 H 1.09003 * 109.23299 * 55.00569 * 10 9 7 22 22 H 1.09002 * 109.38725 * 289.87078 * 11 10 9 23 23 H 1.09005 * 109.39046 * 49.55436 * 11 10 9 24 24 H 1.08999 * 109.58468 * 303.84931 * 12 11 10 25 25 H 1.09000 * 109.63033 * 183.58926 * 12 11 10 26 26 H 1.09006 * 109.54969 * 294.44253 * 16 13 12 27 27 H 1.08996 * 109.62830 * 174.20606 * 16 13 12 28 28 H 1.09002 * 109.38761 * 310.44586 * 17 10 9 29 29 H 1.08997 * 109.38579 * 70.23480 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 3.0447 -3.6404 -1.3001 12 6 4.2106 -4.6280 -1.2134 13 16 3.5476 -6.3111 -1.0464 14 8 4.6124 -7.1873 -0.7035 15 8 2.7469 -6.6015 -2.1838 16 6 2.4607 -6.1241 0.3972 17 6 1.4824 -4.9760 0.1389 18 1 -0.4851 0.8400 0.0004 19 1 0.6242 -2.5567 -0.8904 20 1 0.6248 -2.5571 0.8896 21 1 2.9274 -3.5514 0.8426 22 1 2.3945 -3.9190 -2.1294 23 1 3.4336 -2.6362 -1.4690 24 1 4.8266 -4.3909 -0.3460 25 1 4.8145 -4.5620 -2.1185 26 1 3.0610 -5.9004 1.2792 27 1 1.9049 -7.0476 0.5591 28 1 0.7835 -4.9019 0.9721 29 1 0.9303 -5.1730 -0.7800 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214494820.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:29 Heat of formation + Delta-G solvation = -119.390233 kcal Electronic energy + Delta-G solvation = -13285.663588 eV Core-core repulsion = 10913.199914 eV Total energy + Delta-G solvation = -2372.463674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85823 -37.82428 -37.01174 -34.84699 -32.64465 -31.28117 -27.27137 -24.45941 -23.91890 -21.04832 -19.72739 -18.44366 -17.69451 -17.18443 -16.62320 -16.54873 -15.36191 -15.08707 -14.85024 -14.24253 -14.09769 -13.70530 -13.20886 -13.11878 -13.02668 -12.99125 -12.70288 -12.54303 -12.34604 -12.08604 -11.73436 -11.43476 -11.19070 -10.96790 -10.70823 -10.50403 -8.15436 -6.24033 -0.80813 1.42856 1.43603 1.53369 1.83046 2.43608 2.78216 3.07920 3.19594 3.75770 3.82386 3.94466 3.96167 4.23861 4.41492 4.56380 4.73223 4.83925 5.01902 5.09105 5.28403 5.33599 5.45806 5.57901 5.79865 5.91078 6.29440 6.93302 7.44737 8.96404 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059270 B = 0.007447 C = 0.007046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.297986 B = 3759.209239 C = 3973.127240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.098 4.098 11 C -0.103 4.103 12 C -0.586 4.586 13 S 2.427 3.573 14 O -0.982 6.982 15 O -0.981 6.981 16 C -0.583 4.583 17 C -0.108 4.108 18 H 0.261 0.739 19 H -0.006 1.006 20 H -0.003 1.003 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.146 0.854 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -9.457 0.771 11.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.568 4.568 8 H 0.087 0.913 9 C -0.009 4.009 10 C -0.117 4.117 11 C -0.141 4.141 12 C -0.717 4.717 13 S 2.614 3.386 14 O -0.979 6.979 15 O -0.978 6.978 16 C -0.714 4.714 17 C -0.147 4.147 18 H 0.069 0.931 19 H 0.012 0.988 20 H 0.016 0.984 21 H 0.102 0.898 22 H 0.087 0.913 23 H 0.102 0.898 24 H 0.173 0.827 25 H 0.164 0.836 26 H 0.175 0.825 27 H 0.169 0.831 28 H 0.105 0.895 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.312 -10.139 0.240 12.503 hybrid contribution -0.218 1.765 0.387 1.820 sum 7.095 -8.374 0.627 10.994 Atomic orbital electron populations 1.70088 1.07773 1.27485 1.52265 1.25897 0.95581 1.03069 0.95275 0.85582 0.78859 0.79183 0.78230 1.20220 1.21468 1.18495 1.21723 0.93787 0.91897 1.49380 0.91278 1.19043 0.94088 0.92502 0.95287 1.21298 0.97875 0.94496 0.97988 1.21277 0.94373 1.00256 0.98204 1.30104 1.09065 1.19081 1.13406 1.07515 0.76017 0.77818 0.77300 1.93520 1.55605 1.63639 1.85152 1.93513 1.70441 1.84133 1.49754 1.30061 1.13743 1.07930 1.19685 1.21374 0.97783 0.91467 1.04028 0.93055 0.98791 0.98442 0.89809 0.91317 0.89793 0.82745 0.83622 0.82508 0.83146 0.89548 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.02 13.29 21.45 0.28 -54.73 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 15 3 Si 0.96 42.38 29.54 68.60 2.03 44.40 15 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 15 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 15 7 C -0.53 -27.52 8.24 25.60 0.21 -27.31 15 8 H 0.07 3.35 7.07 -2.91 -0.02 3.33 15 9 C 0.03 1.33 4.42 29.85 0.13 1.46 15 10 C -0.10 -3.33 1.89 -11.07 -0.02 -3.35 15 11 C -0.10 -3.19 4.95 30.47 0.15 -3.04 15 12 C -0.59 -13.07 6.35 72.00 0.46 -12.61 15 13 S 2.43 58.38 5.30 -56.49 -0.30 58.08 15 14 O -0.98 -28.33 18.10 -127.38 -2.31 -30.64 15 15 O -0.98 -31.23 17.95 -127.38 -2.29 -33.52 15 16 C -0.58 -11.76 6.35 72.00 0.46 -11.31 15 17 C -0.11 -3.00 5.02 30.47 0.15 -2.85 15 18 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 19 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 15 20 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 15 21 H 0.08 2.59 8.09 -2.39 -0.02 2.57 15 22 H 0.07 2.19 8.01 -2.39 -0.02 2.18 15 23 H 0.08 2.89 6.63 -2.38 -0.02 2.87 15 24 H 0.15 2.70 8.14 -2.39 -0.02 2.68 15 25 H 0.15 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.16 2.38 8.14 -2.38 -0.02 2.36 15 27 H 0.15 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.09 2.37 8.05 -2.39 -0.02 2.35 15 29 H 0.07 2.11 8.01 -2.39 -0.02 2.09 15 Total: -1.00 -70.30 251.15 0.54 -69.76 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.12 Total: 5.24 kcal Atomic # 6 Polarization: -60.59 SS G_CDS: 2.00 Total: -58.59 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.28 Total: -54.73 kcal Atomic # 8 Polarization: -59.57 SS G_CDS: -4.59 Total: -64.16 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 58.38 SS G_CDS: -0.30 Total: 58.08 kcal Total: -70.30 0.54 -69.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214494820.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.632 kcal (2) G-P(sol) polarization free energy of solvation -70.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds