Wall clock time and date at job start Mon Mar 30 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38501 * 126.64392 * 2 1 4 4 C 1.39650 * 126.92301 * 0.02562 * 3 2 1 5 5 H 1.08001 * 120.00216 * 0.27569 * 4 3 2 6 6 C 1.40025 * 119.99947 * 180.28155 * 4 3 2 7 7 N 1.30888 * 119.99812 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99863 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47346 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47100 * 119.99986 * 8 6 4 11 11 H 1.48502 * 109.47508 * 240.00119 * 8 6 4 12 12 C 1.40094 * 106.15223 * 180.25065 * 3 2 1 13 13 N 1.32226 * 108.02315 * 359.74757 * 12 3 2 14 14 C 1.32517 * 110.04381 * 359.97438 * 13 12 3 15 15 C 1.46250 * 125.46329 * 180.02562 * 14 13 12 16 16 C 1.37999 * 126.10193 * 15.02623 * 15 14 13 17 17 C 1.40354 * 106.53639 * 180.02562 * 16 15 14 18 18 C 1.35155 * 107.20964 * 359.97438 * 17 16 15 19 19 O 1.34142 * 109.02519 * 0.23625 * 18 17 16 20 20 H 1.09004 * 109.47195 * 270.20612 * 1 2 3 21 21 H 1.09001 * 109.47152 * 30.20738 * 1 2 3 22 22 H 1.09000 * 109.47176 * 150.20426 * 1 2 3 23 23 H 0.96998 * 119.99560 * 180.02562 * 7 6 4 24 24 H 1.07996 * 125.98695 * 179.76190 * 12 3 2 25 25 H 1.07996 * 126.73090 * 0.03935 * 16 15 14 26 26 H 1.08001 * 126.39268 * 180.02562 * 17 16 15 27 27 H 1.08002 * 125.48432 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2916 1.1113 0.0000 4 6 1.8966 2.4507 0.0005 5 1 0.8467 2.7041 0.0054 6 6 2.8616 3.4653 -0.0055 7 7 4.1339 3.1582 -0.0122 8 14 2.3331 5.2569 -0.0056 9 1 0.8502 5.3357 0.0020 10 1 2.8703 5.9315 1.2034 11 1 2.8587 5.9281 -1.2216 12 6 3.6039 0.6209 -0.0059 13 7 3.5470 -0.7002 -0.0036 14 6 2.2837 -1.1003 0.0039 15 6 1.8345 -2.4921 0.0090 16 6 2.6111 -3.5962 0.2961 17 6 1.7724 -4.7156 0.1803 18 6 0.5463 -4.2628 -0.1639 19 8 0.5879 -2.9262 -0.2708 20 1 -0.3634 0.0037 1.0277 21 1 -0.3633 0.8881 -0.5171 22 1 -0.3633 -0.8918 -0.5107 23 1 4.8024 3.8610 -0.0160 24 1 4.5042 1.2173 -0.0111 25 1 3.6587 -3.5983 0.5586 26 1 2.0540 -5.7463 0.3377 27 1 -0.3253 -4.8783 -0.3305 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219284726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:27 Heat of formation + Delta-G solvation = 42.129222 kcal Electronic energy + Delta-G solvation = -14028.092986 eV Core-core repulsion = 11559.482121 eV Total energy + Delta-G solvation = -2468.610865 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.25709 -41.67602 -35.76029 -34.61243 -33.69418 -31.79683 -29.74107 -27.50840 -26.51290 -23.06718 -22.60127 -21.56118 -20.63153 -19.09118 -18.11778 -17.30984 -16.99669 -16.34831 -15.87968 -15.27707 -14.74223 -14.30108 -13.87928 -13.75723 -13.57081 -13.37698 -13.10781 -12.96126 -12.92231 -12.57167 -11.90736 -11.41398 -10.82271 -10.45511 -10.24013 -9.87271 -8.65880 -8.59683 -6.34167 0.41800 1.30856 1.42481 1.59669 1.65117 1.93107 2.04090 2.15651 2.44356 2.78629 3.26676 3.94596 4.15464 4.20579 4.34313 4.44431 4.57720 4.68614 4.99083 5.04199 5.09940 5.23156 5.51110 5.57859 5.73462 5.86791 6.23647 6.35115 6.67736 6.80720 7.02576 7.72068 8.31631 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.066481 B = 0.007433 C = 0.006725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.074207 B = 3765.871265 C = 4162.453925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.506 5.506 3 C 0.177 3.823 4 C -0.458 4.458 5 H 0.090 0.910 6 C 0.030 3.970 7 N -0.820 5.820 8 Si 1.012 2.988 9 H -0.253 1.253 10 H -0.264 1.264 11 H -0.264 1.264 12 C -0.156 4.156 13 N -0.468 5.468 14 C 0.101 3.899 15 C 0.069 3.931 16 C -0.214 4.214 17 C -0.206 4.206 18 C -0.053 4.053 19 O -0.189 6.189 20 H 0.066 0.934 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.293 0.707 24 H 0.180 0.820 25 H 0.139 0.861 26 H 0.181 0.819 27 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -5.172 -0.003 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.200 5.200 3 C 0.063 3.937 4 C -0.493 4.493 5 H 0.108 0.892 6 C -0.186 4.186 7 N -0.446 5.446 8 Si 0.831 3.169 9 H -0.177 1.177 10 H -0.189 1.189 11 H -0.189 1.189 12 C -0.309 4.309 13 N -0.188 5.188 14 C -0.142 4.142 15 C 0.018 3.982 16 C -0.236 4.236 17 C -0.225 4.225 18 C -0.120 4.120 19 O -0.085 6.085 20 H 0.084 0.916 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.197 0.803 25 H 0.157 0.843 26 H 0.198 0.802 27 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.583 -5.537 -0.092 9.389 hybrid contribution -0.263 1.087 0.062 1.120 sum -7.846 -4.450 -0.030 9.020 Atomic orbital electron populations 1.21800 0.76404 1.03896 1.02660 1.45426 1.06862 1.05520 1.62231 1.19534 0.89654 0.87738 0.96767 1.18857 0.95758 0.88022 1.46625 0.89211 1.26898 0.93849 1.06609 0.91234 1.69670 1.02603 1.37352 1.34985 0.84709 0.79737 0.73510 0.78961 1.17651 1.18908 1.18898 1.23491 0.97849 0.88022 1.21525 1.69430 1.18048 1.15169 1.16138 1.19219 0.86194 0.84620 1.24186 1.19090 0.83257 0.90125 1.05738 1.22034 1.01007 0.91251 1.09315 1.21965 0.93053 1.00341 1.07112 1.25002 1.01714 0.79374 1.05930 1.84001 1.30120 1.24931 1.69488 0.91577 0.89687 0.89661 0.89556 0.80344 0.84340 0.80174 0.73380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.67 10.72 127.77 1.37 5.04 15 2 N -0.51 -25.92 3.26 -530.33 -1.73 -27.64 15 3 C 0.18 10.00 6.74 38.88 0.26 10.26 15 4 C -0.46 -23.90 9.03 23.04 0.21 -23.69 15 5 H 0.09 4.29 7.30 -2.91 -0.02 4.26 15 6 C 0.03 1.46 5.50 85.27 0.47 1.93 15 7 N -0.82 -42.12 10.31 21.85 0.23 -41.89 15 8 Si 1.01 36.09 29.56 68.60 2.03 38.12 15 9 H -0.25 -8.59 7.11 99.48 0.71 -7.89 15 10 H -0.26 -9.08 7.11 99.48 0.71 -8.38 15 11 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 12 C -0.16 -9.32 10.84 85.08 0.92 -8.40 15 13 N -0.47 -27.26 11.16 -186.75 -2.08 -29.35 15 14 C 0.10 5.40 7.74 135.52 1.05 6.45 15 15 C 0.07 3.10 7.06 24.30 0.17 3.27 15 16 C -0.21 -8.42 10.90 22.73 0.25 -8.17 15 17 C -0.21 -5.92 10.87 22.07 0.24 -5.68 15 18 C -0.05 -1.42 12.06 67.11 0.81 -0.61 15 19 O -0.19 -6.95 8.78 -7.22 -0.06 -7.01 15 20 H 0.07 2.35 8.14 -2.38 -0.02 2.33 15 21 H 0.08 3.05 7.52 -2.39 -0.02 3.03 15 22 H 0.08 3.01 6.35 -2.39 -0.02 3.00 15 23 H 0.29 13.38 8.30 -92.71 -0.77 12.61 15 24 H 0.18 10.93 5.73 -2.91 -0.02 10.91 15 25 H 0.14 5.55 8.06 -2.91 -0.02 5.53 15 26 H 0.18 3.69 8.06 -2.91 -0.02 3.67 15 27 H 0.25 3.59 8.06 -2.91 -0.02 3.57 15 Total: -1.00 -68.40 243.35 5.32 -63.08 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 1.19 Total: 24.28 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 5.75 Total: -19.59 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -3.59 Total: -98.88 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.06 Total: -7.01 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -68.40 5.32 -63.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219284726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.208 kcal (2) G-P(sol) polarization free energy of solvation -68.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds