Wall clock time and date at job start Mon Mar 30 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35396 * 126.17799 * 2 1 4 4 C 1.39417 * 106.70991 * 180.15384 * 3 2 1 5 5 C 1.41220 * 126.25183 * 179.83719 * 4 3 2 6 6 H 1.07993 * 120.00515 * 6.01542 * 5 4 3 7 7 C 1.39539 * 119.99664 * 186.01536 * 5 4 3 8 8 N 1.31111 * 120.00247 * 183.24329 * 7 5 4 9 9 Si 1.86805 * 119.99974 * 3.25014 * 7 5 4 10 10 H 1.48507 * 109.47057 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46869 * 299.99344 * 9 7 5 12 12 H 1.48497 * 109.47567 * 59.99801 * 9 7 5 13 13 N 1.35006 * 107.48769 * 359.57957 * 4 3 2 14 14 C 1.31571 * 109.02580 * 0.26090 * 13 4 3 15 15 C 1.46858 * 125.43796 * 179.97438 * 14 13 4 16 16 C 1.36510 * 125.97849 * 15.02483 * 15 14 13 17 17 C 1.40572 * 106.71599 * 179.97438 * 16 15 14 18 18 C 1.34992 * 107.10259 * 359.97438 * 17 16 15 19 19 O 1.34186 * 108.74763 * 359.77345 * 18 17 16 20 20 H 1.09002 * 109.46658 * 270.31694 * 1 2 3 21 21 H 1.09003 * 109.46930 * 30.31413 * 1 2 3 22 22 H 1.08996 * 109.47433 * 150.31700 * 1 2 3 23 23 H 1.08001 * 126.64340 * 0.02562 * 3 2 1 24 24 H 0.97002 * 119.99798 * 354.79444 * 8 7 5 25 25 H 1.08001 * 126.63434 * 359.93992 * 16 15 14 26 26 H 1.08006 * 126.45110 * 179.97438 * 17 16 15 27 27 H 1.08004 * 125.62979 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2642 1.0929 0.0000 4 6 3.5787 0.6282 -0.0036 5 6 4.7455 1.4237 -0.0081 6 1 4.6682 2.4964 0.0890 7 6 5.9985 0.8234 -0.1380 8 7 7.0851 1.5546 -0.0784 9 14 6.1277 -1.0221 -0.3970 10 1 7.5578 -1.4081 -0.5034 11 1 5.5094 -1.7279 0.7540 12 1 5.4188 -1.3975 -1.6466 13 7 3.5320 -0.7210 0.0038 14 6 2.2741 -1.1067 0.0060 15 6 1.8108 -2.5002 0.0132 16 6 2.5702 -3.5964 0.3050 17 6 1.7264 -4.7149 0.1911 18 6 0.5058 -4.2572 -0.1598 19 8 0.5593 -2.9203 -0.2610 20 1 -0.3633 0.0057 1.0277 21 1 -0.3633 0.8872 -0.5187 22 1 -0.3634 -0.8928 -0.5089 23 1 1.9452 2.1247 0.0004 24 1 7.0171 2.5205 -0.0199 25 1 3.6169 -3.6029 0.5711 26 1 2.0025 -5.7463 0.3538 27 1 -0.3703 -4.8663 -0.3271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219284777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:28 Heat of formation + Delta-G solvation = 63.513295 kcal Electronic energy + Delta-G solvation = -14176.967984 eV Core-core repulsion = 11709.284402 eV Total energy + Delta-G solvation = -2467.683582 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.25447 -40.42931 -33.98278 -32.97528 -32.30637 -30.59467 -27.75209 -26.90309 -24.27209 -21.77340 -21.49062 -19.65078 -19.32983 -17.65764 -17.18962 -15.88250 -15.66225 -14.68274 -14.27795 -13.65064 -13.34076 -12.80639 -12.68247 -12.41228 -12.35010 -11.94678 -11.80182 -11.74887 -10.62952 -10.35253 -9.73186 -9.31996 -9.08919 -8.82367 -8.42815 -8.18153 -7.05490 -6.88104 -4.24859 1.60835 2.68238 3.01210 3.38479 3.57192 3.74231 3.75803 4.16136 4.36529 4.60927 4.91381 5.17313 5.25599 5.37246 5.48831 5.57136 5.68356 5.91779 6.03625 6.18455 6.33023 6.67260 6.82164 7.15941 7.30900 7.38789 7.89954 8.07628 8.47071 8.60748 9.04369 9.33123 10.47130 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.011254 C = 0.008535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.893605 B = 2487.490670 C = 3279.822640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.442 5.442 3 C -0.183 4.183 4 C 0.187 3.813 5 C -0.504 4.504 6 H 0.076 0.924 7 C 0.047 3.953 8 N -0.848 5.848 9 Si 1.118 2.882 10 H -0.320 1.320 11 H -0.271 1.271 12 H -0.287 1.287 13 N -0.505 5.505 14 C 0.232 3.768 15 C 0.082 3.918 16 C -0.179 4.179 17 C -0.204 4.204 18 C -0.058 4.058 19 O -0.181 6.181 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.156 0.844 24 H 0.276 0.724 25 H 0.155 0.845 26 H 0.149 0.851 27 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.959 -8.750 0.028 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.129 5.129 3 C -0.313 4.313 4 C 0.061 3.939 5 C -0.539 4.539 6 H 0.094 0.906 7 C -0.168 4.168 8 N -0.475 5.475 9 Si 0.950 3.050 10 H -0.251 1.251 11 H -0.197 1.197 12 H -0.214 1.214 13 N -0.235 5.235 14 C -0.020 4.020 15 C 0.031 3.969 16 C -0.200 4.200 17 C -0.224 4.224 18 C -0.126 4.126 19 O -0.077 6.077 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.099 0.901 23 H 0.173 0.827 24 H 0.086 0.914 25 H 0.173 0.827 26 H 0.167 0.833 27 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -11.632 -10.181 -0.177 15.460 hybrid contribution -1.914 1.926 0.206 2.723 sum -13.546 -8.255 0.029 15.863 Atomic orbital electron populations 1.21862 0.78491 1.03568 1.02371 1.44528 1.05826 1.06511 1.56023 1.22553 0.90625 0.90419 1.27707 1.18651 0.92375 0.86894 0.95948 1.19540 0.90109 0.94616 1.49666 0.90579 1.27120 0.91043 1.09100 0.89551 1.70768 1.30796 1.08490 1.37420 0.82629 0.71202 0.71905 0.79277 1.25059 1.19735 1.21380 1.69813 1.14504 1.13253 1.25956 1.19296 0.86419 0.83068 1.13186 1.18935 0.82013 0.91002 1.04980 1.21766 1.01523 0.90194 1.06527 1.21720 0.93513 1.00073 1.07058 1.23984 1.00407 0.80459 1.07702 1.84002 1.30616 1.23335 1.69723 0.91827 0.90439 0.90122 0.82651 0.91375 0.82685 0.83334 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.86 59.85 0.65 1.86 15 2 N -0.44 -9.37 3.16 -120.91 -0.38 -9.75 15 3 C -0.18 -4.33 11.59 -15.54 -0.18 -4.51 15 4 C 0.19 5.12 6.40 -84.90 -0.54 4.58 15 5 C -0.50 -14.73 9.81 -37.97 -0.37 -15.10 15 6 H 0.08 2.23 8.05 -52.49 -0.42 1.81 15 7 C 0.05 1.40 5.51 -17.37 -0.10 1.30 15 8 N -0.85 -25.19 13.67 55.53 0.76 -24.43 15 9 Si 1.12 29.48 25.82 -169.99 -4.39 25.09 15 10 H -0.32 -8.24 7.11 56.52 0.40 -7.84 15 11 H -0.27 -7.02 6.77 56.52 0.38 -6.64 15 12 H -0.29 -7.60 7.11 56.52 0.40 -7.19 15 13 N -0.50 -13.48 6.46 -8.94 -0.06 -13.53 15 14 C 0.23 5.40 7.72 -154.40 -1.19 4.21 15 15 C 0.08 1.63 7.02 -36.72 -0.26 1.37 15 16 C -0.18 -3.25 10.82 -39.33 -0.43 -3.68 15 17 C -0.20 -2.85 10.88 -39.86 -0.43 -3.28 15 18 C -0.06 -0.73 12.08 29.58 0.36 -0.38 15 19 O -0.18 -2.96 8.72 4.56 0.04 -2.92 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.08 1.13 6.28 -51.93 -0.33 0.81 15 23 H 0.16 3.26 8.06 -52.49 -0.42 2.84 15 24 H 0.28 7.89 8.73 -40.82 -0.36 7.53 15 25 H 0.16 2.91 8.06 -52.49 -0.42 2.49 15 26 H 0.15 1.59 8.06 -52.48 -0.42 1.17 15 27 H 0.20 1.57 8.06 -52.48 -0.42 1.15 15 LS Contribution 243.08 15.07 3.66 3.66 Total: -1.00 -33.08 243.08 -5.32 -38.40 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -2.46 Total: -2.89 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -2.49 Total: -13.63 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.32 Total: -47.72 kcal Atomic # 8 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 29.48 SS G_CDS: -4.39 Total: 25.09 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.08 -5.32 -38.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219284777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.909 kcal (2) G-P(sol) polarization free energy of solvation -33.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds