Wall clock time and date at job start Mon Mar 30 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35396 * 126.17799 * 2 1 4 4 C 1.39417 * 106.70991 * 180.15384 * 3 2 1 5 5 C 1.41220 * 126.25183 * 179.83719 * 4 3 2 6 6 H 1.07993 * 120.00515 * 6.01542 * 5 4 3 7 7 C 1.39539 * 119.99664 * 186.01536 * 5 4 3 8 8 N 1.31111 * 120.00247 * 183.24329 * 7 5 4 9 9 Si 1.86805 * 119.99974 * 3.25014 * 7 5 4 10 10 H 1.48507 * 109.47057 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46869 * 299.99344 * 9 7 5 12 12 H 1.48497 * 109.47567 * 59.99801 * 9 7 5 13 13 N 1.35006 * 107.48769 * 359.57957 * 4 3 2 14 14 C 1.31571 * 109.02580 * 0.26090 * 13 4 3 15 15 C 1.46858 * 125.43796 * 179.97438 * 14 13 4 16 16 C 1.36510 * 125.97849 * 15.02483 * 15 14 13 17 17 C 1.40572 * 106.71599 * 179.97438 * 16 15 14 18 18 C 1.34992 * 107.10259 * 359.97438 * 17 16 15 19 19 O 1.34186 * 108.74763 * 359.77345 * 18 17 16 20 20 H 1.09002 * 109.46658 * 270.31694 * 1 2 3 21 21 H 1.09003 * 109.46930 * 30.31413 * 1 2 3 22 22 H 1.08996 * 109.47433 * 150.31700 * 1 2 3 23 23 H 1.08001 * 126.64340 * 0.02562 * 3 2 1 24 24 H 0.97002 * 119.99798 * 354.79444 * 8 7 5 25 25 H 1.08001 * 126.63434 * 359.93992 * 16 15 14 26 26 H 1.08006 * 126.45110 * 179.97438 * 17 16 15 27 27 H 1.08004 * 125.62979 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2642 1.0929 0.0000 4 6 3.5787 0.6282 -0.0036 5 6 4.7455 1.4237 -0.0081 6 1 4.6682 2.4964 0.0890 7 6 5.9985 0.8234 -0.1380 8 7 7.0851 1.5546 -0.0784 9 14 6.1277 -1.0221 -0.3970 10 1 7.5578 -1.4081 -0.5034 11 1 5.5094 -1.7279 0.7540 12 1 5.4188 -1.3975 -1.6466 13 7 3.5320 -0.7210 0.0038 14 6 2.2741 -1.1067 0.0060 15 6 1.8108 -2.5002 0.0132 16 6 2.5702 -3.5964 0.3050 17 6 1.7264 -4.7149 0.1911 18 6 0.5058 -4.2572 -0.1598 19 8 0.5593 -2.9203 -0.2610 20 1 -0.3633 0.0057 1.0277 21 1 -0.3633 0.8872 -0.5187 22 1 -0.3634 -0.8928 -0.5089 23 1 1.9452 2.1247 0.0004 24 1 7.0171 2.5205 -0.0199 25 1 3.6169 -3.6029 0.5711 26 1 2.0025 -5.7463 0.3538 27 1 -0.3703 -4.8663 -0.3271 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219284777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:28 Heat of formation + Delta-G solvation = 41.828290 kcal Electronic energy + Delta-G solvation = -14177.908316 eV Core-core repulsion = 11709.284402 eV Total energy + Delta-G solvation = -2468.623914 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.51975 -42.20747 -35.90236 -34.59488 -33.84443 -32.13961 -29.47706 -28.43420 -26.04059 -23.30949 -22.76733 -21.44664 -20.90710 -19.68657 -18.62048 -17.20384 -17.12827 -16.18267 -15.88655 -15.55538 -15.28980 -14.16770 -14.03207 -13.99604 -13.79084 -13.62102 -13.52309 -13.16484 -12.65588 -12.34010 -11.49484 -11.21164 -10.94687 -10.47037 -10.17401 -10.10247 -9.13576 -8.75056 -6.39672 0.22148 1.33942 1.52714 1.54990 1.72897 1.88296 2.00804 2.13608 2.38924 2.51332 3.38578 3.66853 4.01430 4.08742 4.19706 4.26556 4.37289 4.57407 4.72230 4.94269 5.03043 5.08056 5.30557 5.48698 5.56922 5.69011 5.98731 6.22079 6.49549 6.58083 6.94228 7.38885 8.26490 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.033731 B = 0.011254 C = 0.008535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.893605 B = 2487.490670 C = 3279.822640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.439 5.439 3 C -0.165 4.165 4 C 0.141 3.859 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.879 5.879 9 Si 1.158 2.842 10 H -0.315 1.315 11 H -0.272 1.272 12 H -0.294 1.294 13 N -0.541 5.541 14 C 0.233 3.767 15 C 0.034 3.966 16 C -0.180 4.180 17 C -0.216 4.216 18 C -0.018 4.018 19 O -0.179 6.179 20 H 0.084 0.916 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.181 0.819 24 H 0.271 0.729 25 H 0.138 0.862 26 H 0.184 0.816 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 -11.343 -0.101 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.124 5.124 3 C -0.296 4.296 4 C 0.015 3.985 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.508 5.508 9 Si 0.988 3.012 10 H -0.246 1.246 11 H -0.198 1.198 12 H -0.222 1.222 13 N -0.271 5.271 14 C -0.021 4.021 15 C -0.017 4.017 16 C -0.202 4.202 17 C -0.234 4.234 18 C -0.085 4.085 19 O -0.075 6.075 20 H 0.103 0.897 21 H 0.122 0.878 22 H 0.113 0.887 23 H 0.198 0.802 24 H 0.081 0.919 25 H 0.156 0.844 26 H 0.201 0.799 27 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -15.241 -12.757 -0.301 19.877 hybrid contribution -1.167 2.537 0.257 2.804 sum -16.407 -10.220 -0.044 19.330 Atomic orbital electron populations 1.22277 0.74490 1.05624 1.04387 1.44849 1.08174 1.05074 1.54300 1.22834 0.89876 0.92076 1.24813 1.18756 0.93432 0.87740 0.98552 1.19551 0.91407 0.94130 1.51243 0.92321 1.27878 0.91145 1.11227 0.89588 1.70800 1.31065 1.08250 1.40670 0.82061 0.70960 0.69463 0.78673 1.24576 1.19815 1.22172 1.69602 1.17147 1.12998 1.27323 1.19781 0.85946 0.85187 1.11173 1.18580 0.83958 0.89679 1.09521 1.22002 1.01297 0.91833 1.05071 1.22080 0.93116 1.00549 1.07681 1.25205 1.01673 0.79046 1.02624 1.84000 1.28715 1.25233 1.69560 0.89739 0.87804 0.88723 0.80226 0.91923 0.84425 0.79906 0.72427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.91 10.86 127.77 1.39 3.30 15 2 N -0.44 -17.76 3.16 -536.44 -1.69 -19.46 15 3 C -0.16 -7.66 11.59 84.43 0.98 -6.68 15 4 C 0.14 7.93 6.40 39.67 0.25 8.19 15 5 C -0.53 -32.23 9.81 23.32 0.23 -32.00 15 6 H 0.06 3.64 8.05 -2.91 -0.02 3.61 15 7 C 0.01 0.69 5.51 85.11 0.47 1.16 15 8 N -0.88 -54.60 13.67 21.76 0.30 -54.30 15 9 Si 1.16 62.44 25.82 68.60 1.77 64.21 15 10 H -0.31 -16.33 7.11 99.48 0.71 -15.63 15 11 H -0.27 -14.39 6.77 99.48 0.67 -13.72 15 12 H -0.29 -15.91 7.11 99.48 0.71 -15.20 15 13 N -0.54 -29.25 6.46 -182.20 -1.18 -30.43 15 14 C 0.23 10.66 7.72 135.99 1.05 11.70 15 15 C 0.03 1.27 7.02 24.12 0.17 1.44 15 16 C -0.18 -6.21 10.82 22.44 0.24 -5.97 15 17 C -0.22 -5.01 10.88 22.09 0.24 -4.77 15 18 C -0.02 -0.35 12.08 67.07 0.81 0.46 15 19 O -0.18 -5.08 8.72 -6.60 -0.06 -5.14 15 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.09 2.25 6.28 -2.39 -0.02 2.24 15 23 H 0.18 7.27 8.06 -2.91 -0.02 7.25 15 24 H 0.27 16.38 8.73 -92.71 -0.81 15.57 15 25 H 0.14 5.16 8.06 -2.91 -0.02 5.13 15 26 H 0.18 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.26 1.85 8.06 -2.91 -0.02 1.83 15 Total: -1.00 -76.30 243.08 6.08 -70.23 By element: Atomic # 1 Polarization: -3.05 SS G_CDS: 1.11 Total: -1.95 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 5.83 Total: -23.17 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -2.58 Total: -104.19 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.06 Total: -5.14 kcal Atomic # 14 Polarization: 62.44 SS G_CDS: 1.77 Total: 64.21 kcal Total: -76.30 6.08 -70.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219284777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.054 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds