Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34756 * 119.36392 * 2 1 4 4 C 1.41579 * 119.49228 * 180.02562 * 3 2 1 5 5 C 1.41462 * 134.20351 * 180.02562 * 4 3 2 6 6 C 1.34752 * 107.80622 * 179.67070 * 5 4 3 7 7 N 1.36676 * 109.47604 * 0.43499 * 6 5 4 8 8 C 1.37075 * 125.58849 * 179.82260 * 7 6 5 9 9 H 1.08004 * 119.99615 * 158.48571 * 8 7 6 10 10 C 1.38958 * 119.99843 * 338.75957 * 8 7 6 11 11 N 1.31357 * 120.00032 * 161.30667 * 10 8 7 12 12 Si 1.86799 * 120.00267 * 341.31130 * 10 8 7 13 13 H 1.48504 * 109.47196 * 94.26931 * 12 10 8 14 14 H 1.48499 * 109.47242 * 214.26930 * 12 10 8 15 15 H 1.48504 * 109.47240 * 334.26975 * 12 10 8 16 16 C 1.37795 * 108.82642 * 359.55589 * 7 6 5 17 17 C 1.40598 * 133.99101 * 180.30024 * 16 7 6 18 18 O 1.22032 * 120.09770 * 359.97438 * 17 16 7 19 19 N 1.34720 * 119.80367 * 179.97438 * 17 16 7 20 20 H 0.97007 * 119.23838 * 180.02562 * 19 17 16 21 21 H 1.09000 * 109.46843 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47080 * 300.01973 * 1 2 3 23 23 H 1.09001 * 109.46803 * 60.02001 * 1 2 3 24 24 H 1.08004 * 120.25260 * 359.97438 * 3 2 1 25 25 H 1.07999 * 126.09804 * 359.93614 * 5 4 3 26 26 H 1.07991 * 125.26140 * 180.25053 * 6 5 4 27 27 H 0.96996 * 119.99681 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1679 1.1744 0.0000 4 6 3.5836 1.1776 -0.0006 5 6 4.5676 2.1939 -0.0003 6 6 5.7760 1.5975 0.0062 7 7 5.6144 0.2404 0.0004 8 6 6.6269 -0.6836 0.0009 9 1 6.4379 -1.6917 0.3393 10 6 7.8979 -0.3216 -0.4286 11 7 8.9365 -1.0550 -0.0983 12 14 8.1298 1.2079 -1.4755 13 1 8.4665 2.3600 -0.6011 14 1 9.2329 0.9824 -2.4439 15 1 6.8743 1.4973 -2.2140 16 6 4.2667 -0.0470 -0.0001 17 6 3.5226 -1.2399 0.0004 18 8 4.0945 -2.3179 0.0010 19 7 2.1763 -1.1893 0.0003 20 1 1.6711 -2.0174 0.0010 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 1.6216 2.1061 -0.0004 25 1 4.3833 3.2580 -0.0004 26 1 6.7253 2.1123 0.0119 27 1 9.8237 -0.8021 -0.3978 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230100106.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = 23.539622 kcal Electronic energy + Delta-G solvation = -14344.331774 eV Core-core repulsion = 11874.914804 eV Total energy + Delta-G solvation = -2469.416970 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94229 -38.59734 -36.27453 -33.65607 -31.50309 -30.77965 -29.34841 -26.70479 -24.22796 -22.63150 -21.12568 -20.08572 -18.05693 -17.18623 -16.24901 -15.59380 -15.11535 -14.86067 -13.90208 -13.62857 -13.37770 -13.10032 -12.81793 -12.65277 -12.41794 -12.18760 -11.49417 -11.10574 -10.91447 -10.72669 -10.60810 -10.03557 -9.53967 -9.12717 -8.75773 -7.44921 -7.00917 -6.74992 -4.44779 2.10398 2.50824 2.90416 3.04101 3.15375 3.61037 3.74382 3.80722 4.47491 4.59836 4.89421 5.09195 5.34519 5.67593 5.77372 5.87046 5.98204 6.07319 6.34985 6.53007 6.63569 7.00349 7.08239 7.28695 7.54336 7.68578 7.83248 8.02205 8.13887 8.72272 8.97875 9.06147 10.04797 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044181 B = 0.010562 C = 0.008866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.599856 B = 2650.343989 C = 3157.305796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.061 3.939 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.201 4.201 6 C -0.066 4.066 7 N -0.198 5.198 8 C -0.323 4.323 9 H 0.138 0.862 10 C 0.069 3.931 11 N -0.812 5.812 12 Si 0.896 3.104 13 H -0.264 1.264 14 H -0.282 1.282 15 H -0.244 1.244 16 C -0.111 4.111 17 C 0.571 3.429 18 O -0.562 6.562 19 N -0.626 5.626 20 H 0.403 0.597 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.125 0.875 25 H 0.128 0.872 26 H 0.150 0.850 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 5.592 -0.935 12.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.041 4.041 3 C -0.156 4.156 4 C -0.125 4.125 5 C -0.225 4.225 6 C -0.204 4.204 7 N 0.146 4.854 8 C -0.453 4.453 9 H 0.156 0.844 10 C -0.146 4.146 11 N -0.439 5.439 12 Si 0.721 3.279 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.167 1.167 16 C -0.229 4.229 17 C 0.371 3.629 18 O -0.445 6.445 19 N -0.265 5.265 20 H 0.239 0.761 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.143 0.857 25 H 0.146 0.854 26 H 0.167 0.833 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.878 4.754 -0.932 11.002 hybrid contribution 0.228 0.377 -0.456 0.634 sum -9.650 5.131 -1.388 11.017 Atomic orbital electron populations 1.20724 0.89778 1.02537 1.02915 1.19600 0.93228 0.85814 1.05458 1.19471 0.92218 0.95546 1.08365 1.17815 0.92221 0.92529 1.09906 1.20067 0.90805 0.97266 1.14338 1.21486 0.99124 0.82853 1.16955 1.40087 1.03533 1.04778 1.36971 1.20065 0.86672 0.95675 1.42887 0.84435 1.25510 0.94342 0.98955 0.95794 1.69690 0.99644 1.38005 1.36610 0.86539 0.79711 0.80693 0.80950 1.19067 1.20835 1.16730 1.18511 0.84601 0.94372 1.25366 1.15487 0.80928 0.88500 0.78009 1.90915 1.68807 1.31323 1.53477 1.42734 1.06818 1.08050 1.68917 0.76137 0.92026 0.90712 0.90728 0.85734 0.85449 0.83293 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.11 36.01 0.36 -0.69 15 2 C 0.06 0.97 6.81 -81.76 -0.56 0.41 15 3 C -0.13 -2.32 9.70 -39.54 -0.38 -2.71 15 4 C -0.12 -2.58 6.25 -106.65 -0.67 -3.25 15 5 C -0.20 -4.35 10.85 -39.59 -0.43 -4.78 15 6 C -0.07 -1.58 8.36 -16.63 -0.14 -1.72 15 7 N -0.20 -5.33 2.76 -59.48 -0.16 -5.49 15 8 C -0.32 -9.30 10.12 -14.94 -0.15 -9.45 15 9 H 0.14 4.36 7.13 -52.48 -0.37 3.99 15 10 C 0.07 1.86 5.45 -17.49 -0.10 1.76 15 11 N -0.81 -22.13 13.95 55.49 0.77 -21.36 15 12 Si 0.90 20.19 24.67 -169.99 -4.19 15.99 15 13 H -0.26 -5.55 6.71 56.52 0.38 -5.17 15 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 15 H -0.24 -5.66 6.66 56.52 0.38 -5.28 15 16 C -0.11 -2.83 6.80 -83.55 -0.57 -3.40 15 17 C 0.57 13.87 7.71 -15.39 -0.12 13.75 15 18 O -0.56 -15.47 16.62 4.89 0.08 -15.39 15 19 N -0.63 -11.50 5.24 -11.20 -0.06 -11.56 15 20 H 0.40 6.11 8.56 -40.82 -0.35 5.76 15 21 H 0.06 0.54 7.87 -51.93 -0.41 0.13 15 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.12 1.78 8.06 -52.48 -0.42 1.36 15 25 H 0.13 2.27 8.06 -52.49 -0.42 1.85 15 26 H 0.15 3.35 4.39 -52.49 -0.23 3.12 15 27 H 0.29 7.10 8.31 -40.82 -0.34 6.76 15 LS Contribution 234.53 15.07 3.53 3.53 Total: -1.00 -32.07 234.53 -5.01 -37.08 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.24 Total: 7.26 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.74 Total: -10.07 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.55 Total: -38.41 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.08 Total: -15.39 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.19 Total: 15.99 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.07 -5.01 -37.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230100106.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.618 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds