Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35947 * 117.00130 * 2 1 4 4 C 1.38448 * 120.02206 * 0.28137 * 3 2 1 5 5 C 1.38523 * 120.38050 * 180.25151 * 4 3 2 6 6 C 1.37865 * 120.42808 * 359.74820 * 5 4 3 7 7 C 1.39720 * 120.03417 * 359.97001 * 6 5 4 8 8 C 1.43202 * 120.18798 * 180.02562 * 7 6 5 9 9 N 5.86178 * 152.53159 * 359.69539 * 2 1 3 10 10 C 1.39498 * 120.02384 * 179.97438 * 3 2 1 11 11 N 1.38783 * 120.20895 * 0.02964 * 10 3 2 12 12 C 1.36741 * 119.99930 * 334.08667 * 11 10 3 13 13 H 1.08002 * 120.00155 * 347.33364 * 12 11 10 14 14 C 1.38828 * 120.00127 * 167.33680 * 12 11 10 15 15 N 1.31567 * 119.99818 * 359.72240 * 14 12 11 16 16 Si 1.86798 * 120.00454 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46663 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47117 * 119.99841 * 16 14 12 19 19 H 1.48503 * 109.47003 * 240.00240 * 16 14 12 20 20 H 1.08995 * 109.47090 * 60.00046 * 1 2 3 21 21 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47399 * 299.99686 * 1 2 3 23 23 H 1.08003 * 119.80509 * 359.97324 * 4 3 2 24 24 H 1.08005 * 119.78459 * 179.71436 * 5 4 3 25 25 H 1.07999 * 119.98602 * 179.97438 * 6 5 4 26 26 H 0.97001 * 119.99945 * 154.09149 * 11 10 3 27 27 H 0.96993 * 120.00127 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2927 2.3727 0.0059 5 6 1.9138 3.6109 0.0007 6 6 3.2894 3.7019 -0.0052 7 6 4.0671 2.5411 -0.0053 8 6 5.4962 2.6318 -0.0108 9 7 6.6300 2.7038 -0.0144 10 6 3.4392 1.2848 0.0005 11 7 4.1998 0.1240 0.0005 12 6 3.6833 -1.0318 0.5174 13 1 2.7778 -1.0031 1.1053 14 6 4.3230 -2.2421 0.2866 15 7 5.4231 -2.2778 -0.4341 16 14 3.6179 -3.8210 0.9934 17 1 2.3813 -3.5130 1.7559 18 1 3.2975 -4.7586 -0.1126 19 1 4.6147 -4.4462 1.8994 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2143 2.3130 0.0100 24 1 1.3165 4.5107 0.0007 25 1 3.7662 4.6709 -0.0096 26 1 5.0978 0.1325 -0.3663 27 1 5.8698 -3.1235 -0.5957 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231106639.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = 20.847261 kcal Electronic energy + Delta-G solvation = -14084.538065 eV Core-core repulsion = 11615.004345 eV Total energy + Delta-G solvation = -2469.533720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.46610 -36.98421 -35.30010 -35.11184 -32.13170 -29.67823 -28.37527 -26.74386 -24.58607 -22.60807 -21.09151 -18.48781 -18.05374 -16.40504 -15.63008 -15.23626 -14.89823 -14.73415 -14.07508 -13.57639 -13.19771 -12.90765 -12.58370 -11.95202 -11.77894 -11.71622 -11.37320 -11.34084 -10.93903 -10.86910 -10.52484 -10.31195 -10.24002 -9.85886 -8.84919 -7.76500 -6.74603 -6.71657 -3.81115 1.73547 2.40342 3.10069 3.11238 3.16626 3.55831 3.83594 3.94728 4.11682 4.66256 4.97083 5.04785 5.11806 5.53828 5.64819 5.68478 5.86930 5.92755 6.03461 6.42227 6.56606 6.90507 7.12092 7.25930 7.33042 7.50363 7.62990 8.27655 8.47291 8.59152 9.12798 9.29354 10.42183 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.012159 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.561510 B = 2302.341207 C = 3334.615532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.288 6.288 3 C 0.054 3.946 4 C -0.150 4.150 5 C -0.210 4.210 6 C -0.036 4.036 7 C -0.167 4.167 8 C 0.278 3.722 9 N -0.479 5.479 10 C 0.212 3.788 11 N -0.529 5.529 12 C -0.272 4.272 13 H 0.120 0.880 14 C 0.018 3.982 15 N -0.875 5.875 16 Si 0.937 3.063 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.044 0.956 21 H 0.087 0.913 22 H 0.044 0.956 23 H 0.114 0.886 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.400 0.600 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.912 3.635 0.945 10.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.201 6.201 3 C 0.006 3.994 4 C -0.172 4.172 5 C -0.233 4.233 6 C -0.057 4.057 7 C -0.181 4.181 8 C -0.033 4.033 9 N -0.159 5.159 10 C 0.084 3.916 11 N -0.127 5.127 12 C -0.402 4.402 13 H 0.137 0.863 14 C -0.187 4.187 15 N -0.510 5.510 16 Si 0.763 3.237 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.063 0.937 21 H 0.106 0.894 22 H 0.063 0.937 23 H 0.131 0.869 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.236 0.764 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.911 3.004 0.944 8.514 hybrid contribution -0.626 -0.715 0.046 0.951 sum -8.536 2.289 0.990 8.893 Atomic orbital electron populations 1.22913 0.81532 1.02613 1.00171 1.86535 1.18559 1.25764 1.89290 1.18290 0.90102 0.84588 1.06422 1.20805 0.98435 0.92064 1.05879 1.19978 0.93506 0.96036 1.13750 1.20412 0.93233 0.95242 0.96853 1.14837 0.83652 0.92459 1.27135 1.25641 0.92562 0.92970 0.92119 1.81114 1.12248 1.08189 1.14343 1.17046 0.87765 0.85981 1.00799 1.41040 1.14775 1.06044 1.50868 1.20232 1.09871 0.83680 1.26450 0.86266 1.25543 0.96158 1.00189 0.96857 1.69721 1.16795 1.28450 1.36058 0.85666 0.79136 0.80250 0.78619 1.18744 1.20361 1.20523 0.93703 0.89447 0.93711 0.86857 0.87342 0.87216 0.76446 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 101.05 0.99 1.33 15 2 O -0.29 -5.72 7.09 -19.57 -0.14 -5.86 15 3 C 0.05 1.09 6.53 -39.03 -0.25 0.83 15 4 C -0.15 -2.53 9.03 -39.40 -0.36 -2.88 15 5 C -0.21 -3.38 10.02 -39.61 -0.40 -3.77 15 6 C -0.04 -0.63 9.75 -39.16 -0.38 -1.01 15 7 C -0.17 -3.42 5.76 -106.59 -0.61 -4.03 15 8 C 0.28 6.05 14.27 -22.47 -0.32 5.73 15 9 N -0.48 -11.03 18.54 41.84 0.78 -10.26 15 10 C 0.21 4.70 6.49 -83.42 -0.54 4.15 15 11 N -0.53 -13.11 5.12 -9.31 -0.05 -13.16 15 12 C -0.27 -6.87 8.48 -15.14 -0.13 -7.00 15 13 H 0.12 2.94 5.89 -52.49 -0.31 2.63 15 14 C 0.02 0.45 5.50 -17.45 -0.10 0.35 15 15 N -0.88 -23.42 13.10 55.49 0.73 -22.70 15 16 Si 0.94 19.52 29.55 -169.99 -5.02 14.49 15 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 20 H 0.04 0.57 7.67 -51.93 -0.40 0.17 15 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.04 0.56 7.64 -51.93 -0.40 0.16 15 23 H 0.11 1.59 6.27 -52.48 -0.33 1.26 15 24 H 0.11 1.43 8.06 -52.48 -0.42 1.01 15 25 H 0.11 1.63 8.06 -52.49 -0.42 1.21 15 26 H 0.40 10.45 7.18 -40.82 -0.29 10.16 15 27 H 0.28 6.98 8.31 -40.82 -0.34 6.65 15 LS Contribution 247.58 15.07 3.73 3.73 Total: -1.00 -27.58 247.58 -4.20 -31.79 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.13 Total: 8.26 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.10 Total: -6.30 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 1.45 Total: -46.11 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.14 Total: -5.86 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.58 -4.20 -31.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231106639.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.634 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds