Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35947 * 117.00130 * 2 1 4 4 C 1.38448 * 120.02206 * 0.28137 * 3 2 1 5 5 C 1.38523 * 120.38050 * 180.25151 * 4 3 2 6 6 C 1.37865 * 120.42808 * 359.74820 * 5 4 3 7 7 C 1.39720 * 120.03417 * 359.97001 * 6 5 4 8 8 C 1.43202 * 120.18798 * 180.02562 * 7 6 5 9 9 N 5.86178 * 152.53159 * 359.69539 * 2 1 3 10 10 C 1.39498 * 120.02384 * 179.97438 * 3 2 1 11 11 N 1.38783 * 120.20895 * 0.02964 * 10 3 2 12 12 C 1.36741 * 119.99930 * 334.08667 * 11 10 3 13 13 H 1.08002 * 120.00155 * 347.33364 * 12 11 10 14 14 C 1.38828 * 120.00127 * 167.33680 * 12 11 10 15 15 N 1.31567 * 119.99818 * 359.72240 * 14 12 11 16 16 Si 1.86798 * 120.00454 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46663 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47117 * 119.99841 * 16 14 12 19 19 H 1.48503 * 109.47003 * 240.00240 * 16 14 12 20 20 H 1.08995 * 109.47090 * 60.00046 * 1 2 3 21 21 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47399 * 299.99686 * 1 2 3 23 23 H 1.08003 * 119.80509 * 359.97324 * 4 3 2 24 24 H 1.08005 * 119.78459 * 179.71436 * 5 4 3 25 25 H 1.07999 * 119.98602 * 179.97438 * 6 5 4 26 26 H 0.97001 * 119.99945 * 154.09149 * 11 10 3 27 27 H 0.96993 * 120.00127 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2927 2.3727 0.0059 5 6 1.9138 3.6109 0.0007 6 6 3.2894 3.7019 -0.0052 7 6 4.0671 2.5411 -0.0053 8 6 5.4962 2.6318 -0.0108 9 7 6.6300 2.7038 -0.0144 10 6 3.4392 1.2848 0.0005 11 7 4.1998 0.1240 0.0005 12 6 3.6833 -1.0318 0.5174 13 1 2.7778 -1.0031 1.1053 14 6 4.3230 -2.2421 0.2866 15 7 5.4231 -2.2778 -0.4341 16 14 3.6179 -3.8210 0.9934 17 1 2.3813 -3.5130 1.7559 18 1 3.2975 -4.7586 -0.1126 19 1 4.6147 -4.4462 1.8994 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2143 2.3130 0.0100 24 1 1.3165 4.5107 0.0007 25 1 3.7662 4.6709 -0.0096 26 1 5.0978 0.1325 -0.3663 27 1 5.8698 -3.1235 -0.5957 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231106639.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = 3.597766 kcal Electronic energy + Delta-G solvation = -14085.286059 eV Core-core repulsion = 11615.004345 eV Total energy + Delta-G solvation = -2470.281714 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.97731 -38.51368 -36.99609 -36.75568 -33.81771 -31.23034 -29.89372 -28.00306 -26.30092 -24.14593 -22.60755 -20.12726 -19.64719 -17.94285 -17.16124 -16.76979 -16.34985 -16.24157 -15.63755 -15.03671 -14.80094 -14.55256 -14.17799 -13.60605 -13.50186 -13.24187 -12.91529 -12.76289 -12.52527 -12.36546 -12.07760 -11.83278 -11.61185 -11.37693 -10.56687 -9.28280 -8.46964 -8.34149 -5.66940 0.17367 0.90877 1.41904 1.48210 1.56813 1.81643 2.19163 2.29036 2.73543 3.01379 3.30863 3.38101 3.46345 4.32204 4.41339 4.50445 4.62939 4.70040 4.90567 4.92891 5.00915 5.39832 5.48648 5.67706 5.84722 5.86685 6.14481 6.71012 6.78440 6.90843 7.43906 7.54454 8.71461 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.025049 B = 0.012159 C = 0.008395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.561510 B = 2302.341207 C = 3334.615532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.033 3.967 4 C -0.133 4.133 5 C -0.175 4.175 6 C -0.043 4.043 7 C -0.164 4.164 8 C 0.286 3.714 9 N -0.505 5.505 10 C 0.198 3.802 11 N -0.573 5.573 12 C -0.279 4.279 13 H 0.119 0.881 14 C -0.041 4.041 15 N -0.935 5.935 16 Si 0.999 3.001 17 H -0.250 1.250 18 H -0.280 1.280 19 H -0.284 1.284 20 H 0.063 0.937 21 H 0.099 0.901 22 H 0.065 0.935 23 H 0.153 0.847 24 H 0.157 0.843 25 H 0.142 0.858 26 H 0.383 0.617 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.230 6.308 1.389 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C -0.015 4.015 4 C -0.154 4.154 5 C -0.197 4.197 6 C -0.064 4.064 7 C -0.177 4.177 8 C -0.025 4.025 9 N -0.184 5.184 10 C 0.076 3.924 11 N -0.176 5.176 12 C -0.409 4.409 13 H 0.136 0.864 14 C -0.239 4.239 15 N -0.575 5.575 16 Si 0.823 3.177 17 H -0.174 1.174 18 H -0.205 1.205 19 H -0.210 1.210 20 H 0.081 0.919 21 H 0.118 0.882 22 H 0.083 0.917 23 H 0.171 0.829 24 H 0.175 0.825 25 H 0.159 0.841 26 H 0.216 0.784 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.312 5.755 1.409 12.769 hybrid contribution 0.134 -0.989 -0.109 1.004 sum -11.178 4.765 1.300 12.220 Atomic orbital electron populations 1.23238 0.78649 1.04277 1.01910 1.86476 1.21566 1.26041 1.89460 1.18545 0.89621 0.86086 1.07291 1.21352 1.00418 0.91045 1.02581 1.20650 0.93194 0.97461 1.08380 1.20851 0.93951 0.95289 0.96303 1.15313 0.83188 0.93342 1.25872 1.25991 0.92989 0.92073 0.91438 1.81107 1.13133 1.09255 1.14930 1.17666 0.89256 0.85915 0.99531 1.40928 1.14657 1.06854 1.55207 1.20293 1.09610 0.84165 1.26801 0.86373 1.26327 0.96717 1.02909 0.97902 1.69844 1.19178 1.28387 1.40053 0.84747 0.78597 0.76689 0.77712 1.17374 1.20535 1.20979 0.91860 0.88240 0.91672 0.82938 0.82526 0.84060 0.78378 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.81 113.37 1.11 1.46 15 2 O -0.32 -12.30 7.09 -92.96 -0.66 -12.95 15 3 C 0.03 1.25 6.53 22.62 0.15 1.40 15 4 C -0.13 -3.74 9.03 22.39 0.20 -3.54 15 5 C -0.18 -4.44 10.02 22.25 0.22 -4.22 15 6 C -0.04 -1.28 9.75 22.54 0.22 -1.06 15 7 C -0.16 -6.44 5.76 -21.14 -0.12 -6.56 15 8 C 0.29 12.39 14.27 88.33 1.26 13.65 15 9 N -0.50 -23.44 18.54 19.00 0.35 -23.09 15 10 C 0.20 8.71 6.49 38.88 0.25 8.96 15 11 N -0.57 -29.67 5.12 -183.36 -0.94 -30.61 15 12 C -0.28 -14.72 8.48 84.07 0.71 -14.00 15 13 H 0.12 6.00 5.89 -2.91 -0.02 5.98 15 14 C -0.04 -2.17 5.50 84.87 0.47 -1.70 15 15 N -0.93 -53.74 13.10 21.65 0.28 -53.46 15 16 Si 1.00 41.96 29.55 68.60 2.03 43.99 15 17 H -0.25 -9.71 7.11 99.48 0.71 -9.01 15 18 H -0.28 -11.56 7.11 99.48 0.71 -10.86 15 19 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 20 H 0.06 1.32 7.67 -2.39 -0.02 1.31 15 21 H 0.10 2.21 8.14 -2.38 -0.02 2.19 15 22 H 0.06 1.34 7.64 -2.39 -0.02 1.32 15 23 H 0.15 3.17 6.27 -2.91 -0.02 3.15 15 24 H 0.16 2.69 8.06 -2.91 -0.02 2.67 15 25 H 0.14 3.40 8.06 -2.91 -0.02 3.38 15 26 H 0.38 21.43 7.18 -92.71 -0.67 20.76 15 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -64.06 247.58 6.09 -57.98 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.55 Total: 23.77 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.48 Total: -5.62 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -0.30 Total: -107.15 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.66 Total: -12.95 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -64.06 6.09 -57.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231106639.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.573 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds