Wall clock time and date at job start Mon Mar 30 2020 02:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.98877 * 2 1 4 4 O 1.44050 * 109.92306 * 238.75197 * 2 1 3 5 5 C 1.44382 * 106.97875 * 214.02231 * 4 2 1 6 6 C 1.54992 * 103.48899 * 40.14039 * 5 4 2 7 7 C 1.54096 * 109.87535 * 121.08611 * 2 1 3 8 8 H 1.09010 * 110.48540 * 240.25868 * 7 2 1 9 9 S 1.81392 * 110.49305 * 2.77374 * 7 2 1 10 10 O 1.42103 * 109.46830 * 68.50239 * 9 7 2 11 11 C 1.81399 * 103.00454 * 184.89043 * 9 7 2 12 12 C 1.50697 * 109.47292 * 180.02562 * 11 9 7 13 13 H 1.07999 * 120.00182 * 359.72211 * 12 11 9 14 14 C 1.37881 * 119.99746 * 180.02562 * 12 11 9 15 15 N 1.31513 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99872 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47034 * 59.99633 * 16 14 12 18 18 H 1.48499 * 109.47178 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47133 * 300.00094 * 16 14 12 20 20 H 1.09001 * 109.47316 * 292.81239 * 1 2 3 21 21 H 1.09001 * 109.47030 * 52.80803 * 1 2 3 22 22 H 1.08994 * 109.47234 * 172.81008 * 1 2 3 23 23 H 1.09000 * 110.61675 * 281.63811 * 5 4 2 24 24 H 1.08999 * 110.61523 * 158.63961 * 5 4 2 25 25 H 1.09001 * 110.90859 * 204.77952 * 6 5 4 26 26 H 1.09007 * 110.94058 * 81.18689 * 6 5 4 27 27 H 1.09007 * 109.46503 * 60.00158 * 11 9 7 28 28 H 1.09001 * 109.47029 * 300.00548 * 11 9 7 29 29 H 0.97005 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0209 -0.7025 -1.1578 5 6 3.2406 -1.3664 -0.7625 6 6 2.9216 -1.8914 0.6605 7 6 2.0540 -0.7482 1.2411 8 1 2.6601 -0.0853 1.8586 9 16 0.6738 -1.4249 2.2042 10 8 0.0524 -2.4713 1.4705 11 6 1.4963 -2.1169 3.6654 12 6 0.4659 -2.7279 4.5797 13 1 -0.5797 -2.6986 4.3110 14 6 0.8575 -3.3190 5.7623 15 7 2.1302 -3.3499 6.0920 16 14 -0.4198 -4.0757 6.8960 17 1 -1.1420 -5.1559 6.1769 18 1 0.2536 -4.6423 8.0921 19 1 -1.3865 -3.0311 7.3198 20 1 -0.3634 0.3984 0.9473 21 1 -0.3633 0.6212 -0.8187 22 1 -0.3633 -1.0195 -0.1286 23 1 4.0702 -0.6600 -0.7340 24 1 3.4628 -2.1940 -1.4361 25 1 3.8348 -2.0201 1.2415 26 1 2.3574 -2.8230 0.6146 27 1 2.0266 -1.3242 4.1933 28 1 2.2056 -2.8838 3.3540 29 1 2.4057 -3.7660 6.9239 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235377437.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:06 Heat of formation + Delta-G solvation = -117.422459 kcal Electronic energy + Delta-G solvation = -13233.511379 eV Core-core repulsion = 10861.133034 eV Total energy + Delta-G solvation = -2372.378345 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.34280 -36.52186 -35.24604 -33.39592 -32.60125 -30.58701 -27.02739 -25.15196 -23.20348 -22.20863 -18.69752 -18.24309 -17.66881 -16.88376 -16.66492 -16.44914 -15.66024 -15.44548 -14.62580 -14.28591 -13.92385 -13.56860 -13.44009 -13.24764 -12.94406 -12.93953 -12.59776 -12.40489 -12.19245 -12.00237 -11.82770 -11.64349 -10.85960 -10.69453 -10.38040 -8.93376 -8.30972 -6.44744 0.88435 1.38414 1.41777 1.49707 2.07338 2.36101 2.85051 2.99899 3.13053 3.41525 3.86750 3.98997 4.11714 4.28481 4.40721 4.56340 4.65015 4.71634 4.83737 4.92624 4.98882 5.04956 5.12092 5.30999 5.53632 5.90106 5.93903 6.69439 7.24348 8.81405 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.057337 B = 0.008046 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.221074 B = 3479.336546 C = 3743.326323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.107 3.893 3 H 0.116 0.884 4 O -0.401 6.401 5 C 0.057 3.943 6 C -0.153 4.153 7 C -0.456 4.456 8 H 0.159 0.841 9 S 1.290 4.710 10 O -0.915 6.915 11 C -0.276 4.276 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.962 3.038 17 H -0.278 1.278 18 H -0.278 1.278 19 H -0.249 1.249 20 H 0.107 0.893 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.000 1.000 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 10.921 -7.753 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.049 3.951 3 H 0.133 0.867 4 O -0.321 6.321 5 C -0.020 4.020 6 C -0.192 4.192 7 C -0.573 4.573 8 H 0.177 0.823 9 S 1.492 4.508 10 O -0.911 6.911 11 C -0.415 4.415 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.785 3.215 17 H -0.204 1.204 18 H -0.203 1.203 19 H -0.173 1.173 20 H 0.125 0.875 21 H 0.114 0.886 22 H 0.066 0.934 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.018 0.982 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.442 10.865 -8.064 13.538 hybrid contribution 1.397 -2.609 0.451 2.994 sum 0.955 8.256 -7.613 11.270 Atomic orbital electron populations 1.22446 0.94180 1.03484 1.05455 1.22625 0.94912 0.96223 0.81337 0.86671 1.88854 1.40628 1.68239 1.34392 1.23572 0.87871 0.96934 0.93635 1.23122 1.00396 0.96817 0.98833 1.29226 1.14511 1.04900 1.08623 0.82271 1.69019 0.89470 1.06338 0.85997 1.92927 1.65146 1.62410 1.70594 1.25094 1.03785 1.03287 1.09303 1.20901 0.93244 1.38948 1.04854 0.91868 1.25914 0.97617 0.95834 0.99449 1.70065 1.16881 1.44630 1.24547 0.85545 0.79029 0.79212 0.77683 1.20408 1.20275 1.17290 0.87475 0.88627 0.93373 0.89020 0.88820 0.89042 0.94624 0.90733 0.98169 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.10 8.30 71.98 0.60 -4.50 15 2 C 0.11 2.81 4.07 30.97 0.13 2.94 15 3 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 4 O -0.40 -12.59 11.20 -148.98 -1.67 -14.25 15 5 C 0.06 1.55 7.72 72.66 0.56 2.11 15 6 C -0.15 -5.11 6.66 31.89 0.21 -4.90 15 7 C -0.46 -13.56 3.52 31.58 0.11 -13.45 15 8 H 0.16 3.63 8.14 -2.38 -0.02 3.61 15 9 S 1.29 49.32 10.06 -56.49 -0.57 48.75 15 10 O -0.91 -46.28 15.79 -148.98 -2.35 -48.64 15 11 C -0.28 -13.81 5.63 71.23 0.40 -13.41 15 12 C -0.54 -30.46 9.13 25.60 0.23 -30.23 15 13 H 0.06 3.46 7.71 -2.91 -0.02 3.43 15 14 C 0.01 0.71 5.46 84.66 0.46 1.17 15 15 N -0.92 -54.65 13.29 21.45 0.28 -54.37 15 16 Si 0.96 43.59 29.54 68.60 2.03 45.62 15 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 19 H -0.25 -10.36 7.11 99.48 0.71 -9.65 15 20 H 0.11 2.14 7.00 -2.39 -0.02 2.12 15 21 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.05 1.66 6.32 -2.39 -0.02 1.64 15 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 15 26 H 0.03 1.48 7.27 -2.38 -0.02 1.46 15 27 H 0.07 3.55 8.14 -2.39 -0.02 3.53 15 28 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 15 29 H 0.27 14.84 8.31 -92.70 -0.77 14.07 15 Total: -1.00 -76.84 253.43 1.55 -75.29 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.12 Total: 7.87 kcal Atomic # 6 Polarization: -62.98 SS G_CDS: 2.71 Total: -60.27 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.28 Total: -54.37 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -4.02 Total: -62.89 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 49.32 SS G_CDS: -0.57 Total: 48.75 kcal Total: -76.84 1.55 -75.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235377437.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.134 kcal (2) G-P(sol) polarization free energy of solvation -76.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds