Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39718 * 125.10921 * 2 1 4 4 C 1.32517 * 110.81513 * 179.97438 * 3 2 1 5 5 C 1.40971 * 134.00390 * 180.02562 * 4 3 2 6 6 C 1.37669 * 119.43276 * 179.97438 * 5 4 3 7 7 O 1.35879 * 119.29454 * 179.97438 * 6 5 4 8 8 C 1.39521 * 121.40516 * 359.72023 * 6 5 4 9 9 C 1.36553 * 121.41725 * 0.55555 * 8 6 5 10 10 C 1.39448 * 119.82184 * 359.46502 * 9 8 6 11 11 C 1.37297 * 125.11522 * 179.97438 * 2 1 3 12 12 C 1.39047 * 126.92366 * 0.06876 * 11 2 1 13 13 H 1.08002 * 119.99672 * 321.02341 * 12 11 2 14 14 C 1.40335 * 120.00336 * 141.03245 * 12 11 2 15 15 N 1.30697 * 119.99825 * 155.91643 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 335.91078 * 14 12 11 17 17 H 1.48494 * 109.47270 * 95.50371 * 16 14 12 18 18 H 1.48499 * 109.47225 * 215.50903 * 16 14 12 19 19 H 1.48509 * 109.46850 * 335.50344 * 16 14 12 20 20 H 1.09004 * 109.46516 * 95.26582 * 1 2 3 21 21 H 1.09002 * 109.46926 * 215.25903 * 1 2 3 22 22 H 1.08995 * 109.47276 * 335.26442 * 1 2 3 23 23 H 1.08001 * 120.28056 * 359.93738 * 5 4 3 24 24 H 0.96704 * 113.99854 * 89.99893 * 7 6 5 25 25 H 1.07993 * 119.29059 * 180.27940 * 8 6 5 26 26 H 1.07997 * 120.08376 * 179.74147 * 9 8 6 27 27 H 0.96999 * 119.99356 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2685 1.1430 0.0000 4 6 3.5527 0.8158 0.0006 5 6 4.7521 1.5566 0.0013 6 6 5.9577 0.8920 0.0022 7 8 7.1120 1.6088 0.0024 8 6 6.0195 -0.5018 0.0084 9 6 4.8869 -1.2646 0.0024 10 6 3.6359 -0.6485 0.0011 11 6 2.2547 -1.1231 0.0005 12 6 1.8259 -2.4458 -0.0002 13 1 0.9671 -2.7353 0.5872 14 6 2.5091 -3.4045 -0.7641 15 7 2.4448 -4.6681 -0.4362 16 14 3.5104 -2.8748 -2.2494 17 1 4.9321 -2.7089 -1.8544 18 1 3.4086 -3.9096 -3.3096 19 1 2.9861 -1.5846 -2.7652 20 1 -0.3632 -0.0943 -1.0234 21 1 -0.3633 -0.8392 0.5933 22 1 -0.3633 0.9333 0.4300 23 1 4.7253 2.6363 0.0004 24 1 7.4457 1.8169 0.8859 25 1 6.9839 -0.9879 0.0136 26 1 4.9599 -2.3421 0.0031 27 1 2.9173 -5.3307 -0.9640 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250809438.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = 37.347564 kcal Electronic energy + Delta-G solvation = -14295.762100 eV Core-core repulsion = 11826.943887 eV Total energy + Delta-G solvation = -2468.818213 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48617 -37.70351 -34.72424 -34.10657 -31.51267 -30.10775 -28.57309 -26.02758 -24.97228 -21.71848 -20.96968 -19.43513 -17.69149 -17.31311 -15.81635 -15.55605 -14.89504 -14.28291 -14.17575 -13.60308 -13.16198 -13.06821 -12.71268 -12.10800 -11.94704 -11.60833 -11.35647 -11.04363 -10.60784 -10.34337 -10.03274 -9.93440 -9.70678 -8.82050 -8.70686 -7.42142 -7.37437 -6.69879 -4.89464 1.74538 2.69275 2.89841 3.03896 3.15123 3.46750 3.69034 3.78483 4.42977 4.76400 5.04740 5.40113 5.79286 5.90882 5.99858 6.07393 6.23987 6.35354 6.50222 6.61683 6.64686 7.14800 7.32031 7.39911 7.49572 7.65135 7.79891 7.95103 8.11590 8.42497 8.51480 9.17149 9.57867 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.014289 C = 0.010195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.780568 B = 1959.044655 C = 2745.862569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.401 5.401 3 N -0.401 5.401 4 C 0.149 3.851 5 C -0.196 4.196 6 C 0.156 3.844 7 O -0.509 6.509 8 C -0.272 4.272 9 C 0.017 3.983 10 C -0.287 4.287 11 C 0.278 3.722 12 C -0.435 4.435 13 H 0.107 0.893 14 C 0.107 3.893 15 N -0.768 5.768 16 Si 0.891 3.109 17 H -0.240 1.240 18 H -0.279 1.279 19 H -0.250 1.250 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.112 0.888 24 H 0.380 0.620 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 1.859 0.199 2.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.182 5.182 3 N -0.226 5.226 4 C -0.005 4.005 5 C -0.220 4.220 6 C 0.109 3.891 7 O -0.318 6.318 8 C -0.294 4.294 9 C -0.003 4.003 10 C -0.296 4.296 11 C 0.152 3.848 12 C -0.470 4.470 13 H 0.125 0.875 14 C -0.121 4.121 15 N -0.390 5.390 16 Si 0.714 3.286 17 H -0.164 1.164 18 H -0.205 1.205 19 H -0.173 1.173 20 H 0.078 0.922 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.130 0.870 24 H 0.234 0.766 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.474 2.621 -0.409 2.695 hybrid contribution 0.865 -0.651 -0.046 1.084 sum 1.339 1.970 -0.455 2.425 Atomic orbital electron populations 1.21401 0.76244 1.02483 1.01861 1.48712 1.05209 1.03195 1.61058 1.77090 1.00249 1.05418 1.39836 1.20289 0.91912 0.92415 0.95882 1.19828 0.88772 0.97941 1.15427 1.17939 0.83928 0.89234 0.98024 1.84745 1.39483 1.74817 1.32788 1.20148 0.97595 0.92585 1.19027 1.19904 0.90402 0.98253 0.91764 1.20398 0.92106 0.93319 1.23787 1.19597 0.87918 0.87740 0.89581 1.18362 1.14864 0.88146 1.25632 0.87523 1.26007 0.93714 0.93899 0.98459 1.69604 1.31839 1.02720 1.34833 0.86616 0.82270 0.80135 0.79570 1.16350 1.20514 1.17282 0.92222 0.90674 0.90993 0.86990 0.76579 0.87475 0.87156 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.21 11.15 59.85 0.67 2.88 15 2 N -0.40 -9.57 4.04 -63.89 -0.26 -9.83 15 3 N -0.40 -10.22 12.44 33.18 0.41 -9.81 15 4 C 0.15 3.79 7.45 -83.13 -0.62 3.17 15 5 C -0.20 -4.45 10.06 -38.75 -0.39 -4.84 15 6 C 0.16 3.28 6.66 -39.31 -0.26 3.02 15 7 O -0.51 -8.99 13.46 -19.36 -0.26 -9.25 15 8 C -0.27 -5.85 9.85 -39.71 -0.39 -6.25 15 9 C 0.02 0.39 7.23 -39.74 -0.29 0.10 15 10 C -0.29 -7.25 5.15 -102.92 -0.53 -7.78 15 11 C 0.28 6.93 5.79 -81.99 -0.47 6.46 15 12 C -0.43 -10.61 9.25 -38.49 -0.36 -10.96 15 13 H 0.11 2.60 7.81 -52.49 -0.41 2.19 15 14 C 0.11 2.51 5.21 -17.25 -0.09 2.42 15 15 N -0.77 -17.95 13.92 55.57 0.77 -17.18 15 16 Si 0.89 19.49 24.46 -169.99 -4.16 15.33 15 17 H -0.24 -5.13 5.48 56.52 0.31 -4.82 15 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 19 H -0.25 -5.99 7.11 56.52 0.40 -5.59 15 20 H 0.06 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.07 1.23 7.70 -51.93 -0.40 0.83 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 23 H 0.11 2.34 8.06 -52.49 -0.42 1.92 15 24 H 0.38 4.62 9.06 45.56 0.41 5.03 15 25 H 0.11 2.05 8.06 -52.49 -0.42 1.63 15 26 H 0.11 2.47 6.06 -52.49 -0.32 2.15 15 27 H 0.30 6.21 8.29 -40.82 -0.34 5.87 15 LS Contribution 237.14 15.07 3.57 3.57 Total: -1.00 -29.47 237.14 -4.28 -33.75 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -1.63 Total: 5.20 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.73 Total: -11.78 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.93 Total: -36.81 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.26 Total: -9.25 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.16 Total: 15.33 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.47 -4.28 -33.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250809438.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.096 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds