Wall clock time and date at job start Mon Mar 30 2020 02:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39718 * 125.10921 * 2 1 4 4 C 1.32517 * 110.81513 * 179.97438 * 3 2 1 5 5 C 1.40971 * 134.00390 * 180.02562 * 4 3 2 6 6 C 1.37669 * 119.43276 * 179.97438 * 5 4 3 7 7 O 1.35879 * 119.29454 * 179.97438 * 6 5 4 8 8 C 1.39521 * 121.40516 * 359.72023 * 6 5 4 9 9 C 1.36553 * 121.41725 * 0.55555 * 8 6 5 10 10 C 1.39448 * 119.82184 * 359.46502 * 9 8 6 11 11 C 1.37297 * 125.11522 * 179.97438 * 2 1 3 12 12 C 1.39047 * 126.92366 * 0.06876 * 11 2 1 13 13 H 1.08002 * 119.99672 * 321.02341 * 12 11 2 14 14 C 1.40335 * 120.00336 * 141.03245 * 12 11 2 15 15 N 1.30697 * 119.99825 * 155.91643 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 335.91078 * 14 12 11 17 17 H 1.48494 * 109.47270 * 95.50371 * 16 14 12 18 18 H 1.48499 * 109.47225 * 215.50903 * 16 14 12 19 19 H 1.48509 * 109.46850 * 335.50344 * 16 14 12 20 20 H 1.09004 * 109.46516 * 95.26582 * 1 2 3 21 21 H 1.09002 * 109.46926 * 215.25903 * 1 2 3 22 22 H 1.08995 * 109.47276 * 335.26442 * 1 2 3 23 23 H 1.08001 * 120.28056 * 359.93738 * 5 4 3 24 24 H 0.96704 * 113.99854 * 89.99893 * 7 6 5 25 25 H 1.07993 * 119.29059 * 180.27940 * 8 6 5 26 26 H 1.07997 * 120.08376 * 179.74147 * 9 8 6 27 27 H 0.96999 * 119.99356 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2685 1.1430 0.0000 4 6 3.5527 0.8158 0.0006 5 6 4.7521 1.5566 0.0013 6 6 5.9577 0.8920 0.0022 7 8 7.1120 1.6088 0.0024 8 6 6.0195 -0.5018 0.0084 9 6 4.8869 -1.2646 0.0024 10 6 3.6359 -0.6485 0.0011 11 6 2.2547 -1.1231 0.0005 12 6 1.8259 -2.4458 -0.0002 13 1 0.9671 -2.7353 0.5872 14 6 2.5091 -3.4045 -0.7641 15 7 2.4448 -4.6681 -0.4362 16 14 3.5104 -2.8748 -2.2494 17 1 4.9321 -2.7089 -1.8544 18 1 3.4086 -3.9096 -3.3096 19 1 2.9861 -1.5846 -2.7652 20 1 -0.3632 -0.0943 -1.0234 21 1 -0.3633 -0.8392 0.5933 22 1 -0.3633 0.9333 0.4300 23 1 4.7253 2.6363 0.0004 24 1 7.4457 1.8169 0.8859 25 1 6.9839 -0.9879 0.0136 26 1 4.9599 -2.3421 0.0031 27 1 2.9173 -5.3307 -0.9640 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250809438.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:08 Heat of formation + Delta-G solvation = 15.808731 kcal Electronic energy + Delta-G solvation = -14296.696094 eV Core-core repulsion = 11826.943887 eV Total energy + Delta-G solvation = -2469.752207 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25435 -39.29120 -36.35880 -35.90910 -33.26816 -31.78859 -30.33234 -27.69519 -26.74114 -23.42850 -22.69370 -21.22554 -19.43876 -18.94675 -17.57768 -17.21463 -16.59537 -15.97627 -15.80494 -15.29464 -14.89788 -14.79558 -14.39701 -13.71126 -13.61339 -13.28316 -13.01779 -12.71984 -12.36132 -12.08007 -11.70247 -11.60662 -11.47241 -10.63038 -10.49399 -9.20165 -9.11701 -8.50984 -6.73371 -0.01444 0.95484 1.16756 1.28567 1.38912 1.66737 2.02890 2.05845 2.62852 3.07251 3.40168 3.74571 4.19482 4.36711 4.49619 4.52702 4.60358 4.69160 4.79083 4.91383 4.96783 5.40916 5.58626 5.67331 5.76276 5.88543 6.03473 6.20821 6.31702 6.74605 7.02622 7.33511 7.84780 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.026046 B = 0.014289 C = 0.010195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.780568 B = 1959.044655 C = 2745.862569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.407 5.407 3 N -0.426 5.426 4 C 0.124 3.876 5 C -0.212 4.212 6 C 0.171 3.829 7 O -0.506 6.506 8 C -0.265 4.265 9 C 0.002 3.998 10 C -0.313 4.313 11 C 0.261 3.739 12 C -0.450 4.450 13 H 0.098 0.902 14 C 0.093 3.907 15 N -0.784 5.784 16 Si 0.927 3.073 17 H -0.232 1.232 18 H -0.256 1.256 19 H -0.286 1.286 20 H 0.073 0.927 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.124 0.876 24 H 0.409 0.591 25 H 0.136 0.864 26 H 0.115 0.885 27 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 1.874 -0.018 3.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.188 5.188 3 N -0.252 5.252 4 C -0.029 4.029 5 C -0.235 4.235 6 C 0.124 3.876 7 O -0.319 6.319 8 C -0.286 4.286 9 C -0.018 4.018 10 C -0.322 4.322 11 C 0.134 3.866 12 C -0.486 4.486 13 H 0.116 0.884 14 C -0.134 4.134 15 N -0.407 5.407 16 Si 0.749 3.251 17 H -0.155 1.155 18 H -0.180 1.180 19 H -0.211 1.211 20 H 0.092 0.908 21 H 0.107 0.893 22 H 0.109 0.891 23 H 0.142 0.858 24 H 0.268 0.732 25 H 0.154 0.846 26 H 0.133 0.867 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.819 2.626 -0.604 3.251 hybrid contribution 0.526 -0.563 0.061 0.772 sum 2.345 2.064 -0.543 3.170 Atomic orbital electron populations 1.21754 0.73677 1.04115 1.03264 1.49103 1.06847 1.02560 1.60261 1.76970 1.00785 1.06524 1.40895 1.20738 0.92588 0.93063 0.96480 1.20088 0.88666 0.98683 1.16073 1.17904 0.84460 0.89285 0.95973 1.84675 1.37789 1.74160 1.35229 1.20521 0.98235 0.92914 1.16913 1.20085 0.90415 0.98773 0.92538 1.20735 0.92939 0.93638 1.24908 1.19784 0.88433 0.88172 0.90181 1.18353 1.15235 0.88412 1.26557 0.88392 1.26273 0.94052 0.93843 0.99184 1.69565 1.32361 1.03085 1.35687 0.86124 0.81777 0.78604 0.78586 1.15508 1.18024 1.21115 0.90811 0.89324 0.89137 0.85760 0.73233 0.84642 0.86683 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.02 11.15 127.77 1.42 5.44 15 2 N -0.41 -19.50 4.04 -356.06 -1.44 -20.94 15 3 N -0.43 -21.79 12.44 -48.93 -0.61 -22.40 15 4 C 0.12 6.28 7.45 41.91 0.31 6.59 15 5 C -0.21 -9.32 10.06 22.81 0.23 -9.09 15 6 C 0.17 6.76 6.66 22.44 0.15 6.91 15 7 O -0.51 -15.89 13.46 -92.19 -1.24 -17.13 15 8 C -0.26 -10.66 9.85 22.19 0.22 -10.45 15 9 C 0.00 0.07 7.23 22.17 0.16 0.23 15 10 C -0.31 -15.77 5.15 -18.76 -0.10 -15.86 15 11 C 0.26 13.16 5.79 40.51 0.23 13.40 15 12 C -0.45 -22.12 9.25 22.97 0.21 -21.91 15 13 H 0.10 4.85 7.81 -2.91 -0.02 4.83 15 14 C 0.09 4.33 5.21 85.37 0.44 4.77 15 15 N -0.78 -35.94 13.92 21.90 0.30 -35.63 15 16 Si 0.93 39.32 24.46 68.60 1.68 41.00 15 17 H -0.23 -9.42 5.48 99.48 0.55 -8.88 15 18 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 19 H -0.29 -13.82 7.11 99.48 0.71 -13.11 15 20 H 0.07 2.40 8.14 -2.38 -0.02 2.38 15 21 H 0.09 2.88 7.70 -2.39 -0.02 2.86 15 22 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 23 H 0.12 5.02 8.06 -2.91 -0.02 4.99 15 24 H 0.41 8.16 9.06 -74.05 -0.67 7.49 15 25 H 0.14 4.63 8.06 -2.91 -0.02 4.61 15 26 H 0.12 5.00 6.06 -2.91 -0.02 4.99 15 27 H 0.31 12.50 8.29 -92.71 -0.77 11.73 15 Total: -1.00 -61.74 237.14 2.36 -59.38 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.37 Total: 15.69 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 3.29 Total: -19.96 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -1.74 Total: -78.98 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.24 Total: -17.13 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.68 Total: 41.00 kcal Total: -61.74 2.36 -59.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250809438.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.194 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds