Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29909 * 124.84808 * 2 1 4 4 C 1.36087 * 108.80482 * 179.97438 * 3 2 1 5 5 C 1.39486 * 133.72255 * 180.29588 * 4 3 2 6 6 C 1.38526 * 119.65070 * 180.19241 * 5 4 3 7 7 N 1.39429 * 119.88731 * 179.73234 * 6 5 4 8 8 C 1.36835 * 120.00351 * 179.72709 * 7 6 5 9 9 H 1.08004 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.38767 * 120.00511 * 180.02562 * 8 7 6 11 11 N 1.31611 * 119.99606 * 359.72360 * 10 8 7 12 12 Si 1.86800 * 120.00537 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47364 * 179.72267 * 12 10 8 14 14 H 1.48508 * 109.46883 * 299.72390 * 12 10 8 15 15 H 1.48497 * 109.46870 * 59.72200 * 12 10 8 16 16 C 1.39499 * 120.22699 * 359.46035 * 6 5 4 17 17 C 1.37735 * 120.39059 * 0.29391 * 16 6 5 18 18 C 1.38767 * 119.99929 * 359.97438 * 17 16 6 19 19 O 1.34214 * 124.84837 * 179.97438 * 2 1 3 20 20 H 1.09009 * 109.46983 * 89.99298 * 1 2 3 21 21 H 1.08997 * 109.47368 * 209.99882 * 1 2 3 22 22 H 1.09001 * 109.47130 * 330.00360 * 1 2 3 23 23 H 1.07993 * 120.17771 * 359.92929 * 5 4 3 24 24 H 0.97004 * 119.99693 * 359.73339 * 7 6 5 25 25 H 0.97000 * 120.00330 * 0.27530 * 11 10 8 26 26 H 1.08001 * 119.80257 * 180.27059 * 16 6 5 27 27 H 1.08001 * 119.99958 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2493 1.0661 0.0000 4 6 3.5571 0.6900 0.0006 5 6 4.7623 1.3924 0.0060 6 6 5.9605 0.6974 0.0009 7 7 7.1681 1.3945 0.0007 8 6 8.3531 0.7104 0.0012 9 1 8.3531 -0.3697 0.0014 10 6 9.5549 1.4041 0.0015 11 7 9.5549 2.7202 -0.0042 12 14 11.1727 0.4702 0.0016 13 1 12.3014 1.4352 -0.0049 14 1 11.2541 -0.3788 1.2173 15 1 11.2485 -0.3883 -1.2077 16 6 5.9633 -0.6976 0.0016 17 6 4.7766 -1.3968 0.0014 18 6 3.5688 -0.7135 0.0009 19 8 2.2739 -1.1014 0.0005 20 1 -0.3633 0.0001 -1.0278 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 4.7612 2.4723 0.0100 24 1 7.1680 2.3645 0.0002 25 1 8.7149 3.2053 -0.0046 26 1 6.9015 -1.2325 0.0020 27 1 4.7861 -2.4767 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258687517.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 36.352132 kcal Electronic energy + Delta-G solvation = -13704.377863 eV Core-core repulsion = 11235.516484 eV Total energy + Delta-G solvation = -2468.861378 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.38967 -37.98661 -35.01827 -34.07811 -31.88449 -30.82972 -28.85837 -26.68147 -24.59929 -22.02106 -21.50447 -20.80946 -18.31680 -17.27690 -16.43670 -16.15856 -15.84763 -14.60634 -13.91332 -13.62543 -13.35828 -13.12914 -12.84828 -12.56040 -12.40337 -12.03886 -11.50613 -11.19867 -10.78471 -10.70755 -10.34540 -10.06043 -9.92395 -9.69770 -8.76945 -7.74928 -6.97464 -6.92413 -3.89127 1.43183 2.26187 3.09972 3.17639 3.20967 3.25714 3.40010 4.07708 4.32130 4.46624 4.90379 5.08581 5.25052 5.37080 5.38394 5.58320 5.90544 5.97889 6.04704 6.19539 6.41480 6.85354 6.97353 7.07991 7.18953 7.25980 7.45287 7.93790 8.28815 8.39227 9.17053 9.18601 10.44957 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.077711 B = 0.006204 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.223202 B = 4512.379331 C = 4857.455534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.223 3.777 3 N -0.496 5.496 4 C 0.086 3.914 5 C -0.220 4.220 6 C 0.213 3.787 7 N -0.568 5.568 8 C -0.385 4.385 9 H 0.099 0.901 10 C -0.010 4.010 11 N -0.889 5.889 12 Si 1.090 2.910 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.163 4.163 17 C -0.045 4.045 18 C -0.104 4.104 19 O -0.225 6.225 20 H 0.090 0.910 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.113 0.887 24 H 0.385 0.615 25 H 0.266 0.734 26 H 0.136 0.864 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 -6.199 0.021 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.012 3.988 3 N -0.230 5.230 4 C -0.025 4.025 5 C -0.249 4.249 6 C 0.091 3.909 7 N -0.172 5.172 8 C -0.515 4.515 9 H 0.117 0.883 10 C -0.214 4.214 11 N -0.524 5.524 12 Si 0.915 3.085 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.186 4.186 17 C -0.065 4.065 18 C -0.155 4.155 19 O -0.117 6.117 20 H 0.108 0.892 21 H 0.104 0.896 22 H 0.116 0.884 23 H 0.131 0.869 24 H 0.220 0.780 25 H 0.077 0.923 26 H 0.153 0.847 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.307 -5.452 0.017 9.936 hybrid contribution -1.471 -0.378 -0.010 1.519 sum -9.778 -5.831 0.007 11.384 Atomic orbital electron populations 1.20232 0.82105 1.04722 1.04348 1.26106 0.96154 0.79372 0.97150 1.70504 1.01808 1.29137 1.21574 1.19190 0.90692 0.90985 1.01669 1.18981 0.87780 0.98253 1.19851 1.17402 0.85629 0.91243 0.96634 1.40987 1.02514 1.07261 1.66477 1.20554 0.84347 0.94285 1.52276 0.88292 1.26580 1.02754 0.96570 0.95521 1.70938 1.29905 1.06544 1.44979 0.83147 0.73672 0.74601 0.77110 1.20117 1.20780 1.20780 1.20512 0.96867 0.92587 1.08611 1.19392 0.87267 0.98555 1.01300 1.19782 0.82802 0.94445 1.18476 1.84284 1.16064 1.35536 1.75786 0.89162 0.89610 0.88402 0.86859 0.77977 0.92256 0.84652 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 36.00 0.38 -0.19 15 2 C 0.22 3.79 8.23 -13.09 -0.11 3.68 15 3 N -0.50 -10.10 11.34 -8.71 -0.10 -10.20 15 4 C 0.09 1.90 7.23 -84.72 -0.61 1.29 15 5 C -0.22 -4.95 9.94 -39.01 -0.39 -5.33 15 6 C 0.21 4.87 6.61 -83.83 -0.55 4.32 15 7 N -0.57 -13.84 5.43 -9.61 -0.05 -13.89 15 8 C -0.39 -9.75 9.55 -15.12 -0.14 -9.89 15 9 H 0.10 2.38 5.66 -52.48 -0.30 2.08 15 10 C -0.01 -0.25 5.50 -17.45 -0.10 -0.35 15 11 N -0.89 -24.28 13.70 55.49 0.76 -23.52 15 12 Si 1.09 22.34 29.92 -169.99 -5.09 17.26 15 13 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 14 H -0.28 -5.49 7.11 56.52 0.40 -5.08 15 15 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 16 C -0.16 -3.44 9.29 -39.30 -0.36 -3.80 15 17 C -0.05 -0.88 10.05 -39.57 -0.40 -1.27 15 18 C -0.10 -2.19 7.43 -38.59 -0.29 -2.47 15 19 O -0.22 -4.25 10.77 3.48 0.04 -4.21 15 20 H 0.09 0.74 8.14 -51.92 -0.42 0.32 15 21 H 0.09 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 23 H 0.11 2.44 8.06 -52.49 -0.42 2.02 15 24 H 0.39 9.28 6.72 -40.82 -0.27 9.01 15 25 H 0.27 7.13 6.77 -40.82 -0.28 6.85 15 26 H 0.14 2.72 5.93 -52.49 -0.31 2.41 15 27 H 0.12 1.92 8.06 -52.49 -0.42 1.49 15 LS Contribution 242.44 15.07 3.65 3.65 Total: -1.00 -30.18 242.44 -5.43 -35.61 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -2.07 Total: 9.33 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.57 Total: -14.03 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.61 Total: -47.61 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.09 Total: 17.26 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.18 -5.43 -35.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258687517.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.958 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds