Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29909 * 124.84808 * 2 1 4 4 C 1.36087 * 108.80482 * 179.97438 * 3 2 1 5 5 C 1.39486 * 133.72255 * 180.29588 * 4 3 2 6 6 C 1.38526 * 119.65070 * 180.19241 * 5 4 3 7 7 N 1.39429 * 119.88731 * 179.73234 * 6 5 4 8 8 C 1.36835 * 120.00351 * 179.72709 * 7 6 5 9 9 H 1.08004 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.38767 * 120.00511 * 180.02562 * 8 7 6 11 11 N 1.31611 * 119.99606 * 359.72360 * 10 8 7 12 12 Si 1.86800 * 120.00537 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47364 * 179.72267 * 12 10 8 14 14 H 1.48508 * 109.46883 * 299.72390 * 12 10 8 15 15 H 1.48497 * 109.46870 * 59.72200 * 12 10 8 16 16 C 1.39499 * 120.22699 * 359.46035 * 6 5 4 17 17 C 1.37735 * 120.39059 * 0.29391 * 16 6 5 18 18 C 1.38767 * 119.99929 * 359.97438 * 17 16 6 19 19 O 1.34214 * 124.84837 * 179.97438 * 2 1 3 20 20 H 1.09009 * 109.46983 * 89.99298 * 1 2 3 21 21 H 1.08997 * 109.47368 * 209.99882 * 1 2 3 22 22 H 1.09001 * 109.47130 * 330.00360 * 1 2 3 23 23 H 1.07993 * 120.17771 * 359.92929 * 5 4 3 24 24 H 0.97004 * 119.99693 * 359.73339 * 7 6 5 25 25 H 0.97000 * 120.00330 * 0.27530 * 11 10 8 26 26 H 1.08001 * 119.80257 * 180.27059 * 16 6 5 27 27 H 1.08001 * 119.99958 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2493 1.0661 0.0000 4 6 3.5571 0.6900 0.0006 5 6 4.7623 1.3924 0.0060 6 6 5.9605 0.6974 0.0009 7 7 7.1681 1.3945 0.0007 8 6 8.3531 0.7104 0.0012 9 1 8.3531 -0.3697 0.0014 10 6 9.5549 1.4041 0.0015 11 7 9.5549 2.7202 -0.0042 12 14 11.1727 0.4702 0.0016 13 1 12.3014 1.4352 -0.0049 14 1 11.2541 -0.3788 1.2173 15 1 11.2485 -0.3883 -1.2077 16 6 5.9633 -0.6976 0.0016 17 6 4.7766 -1.3968 0.0014 18 6 3.5688 -0.7135 0.0009 19 8 2.2739 -1.1014 0.0005 20 1 -0.3633 0.0001 -1.0278 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 4.7612 2.4723 0.0100 24 1 7.1680 2.3645 0.0002 25 1 8.7149 3.2053 -0.0046 26 1 6.9015 -1.2325 0.0020 27 1 4.7861 -2.4767 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258687517.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 14.899249 kcal Electronic energy + Delta-G solvation = -13705.308129 eV Core-core repulsion = 11235.516484 eV Total energy + Delta-G solvation = -2469.791645 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.93654 -39.70959 -36.76218 -35.60724 -33.62494 -32.12207 -30.50395 -28.18115 -26.46198 -23.59853 -23.17205 -22.30215 -20.07910 -18.97061 -18.09182 -17.65593 -17.51420 -16.30765 -15.45109 -15.16831 -14.89852 -14.37343 -14.31742 -13.84279 -13.82253 -13.38637 -13.20574 -12.84682 -12.34932 -12.32874 -11.93248 -11.70132 -11.65325 -11.30894 -10.57990 -9.36318 -8.93040 -8.71875 -5.85565 -0.12004 0.57310 1.56833 1.56934 1.68284 1.74986 1.82074 2.43253 2.73930 2.89561 3.22038 3.24554 3.77255 4.19331 4.32676 4.34179 4.51608 4.66640 4.67970 4.78647 4.98677 5.22485 5.33284 5.37839 5.49891 5.56940 5.74548 5.99853 6.49405 6.78944 7.30417 7.36183 8.52228 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.077711 B = 0.006204 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.223202 B = 4512.379331 C = 4857.455534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.245 3.755 3 N -0.534 5.534 4 C 0.066 3.934 5 C -0.235 4.235 6 C 0.206 3.794 7 N -0.593 5.593 8 C -0.395 4.395 9 H 0.109 0.891 10 C -0.059 4.059 11 N -0.928 5.928 12 Si 1.136 2.864 13 H -0.287 1.287 14 H -0.264 1.264 15 H -0.264 1.264 16 C -0.177 4.177 17 C -0.029 4.029 18 C -0.112 4.112 19 O -0.223 6.223 20 H 0.118 0.882 21 H 0.116 0.884 22 H 0.113 0.887 23 H 0.108 0.892 24 H 0.379 0.621 25 H 0.254 0.746 26 H 0.145 0.855 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 -8.622 0.001 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.035 3.965 3 N -0.268 5.268 4 C -0.045 4.045 5 C -0.263 4.263 6 C 0.088 3.912 7 N -0.200 5.200 8 C -0.524 4.524 9 H 0.127 0.873 10 C -0.255 4.255 11 N -0.566 5.566 12 Si 0.955 3.045 13 H -0.212 1.212 14 H -0.189 1.189 15 H -0.189 1.189 16 C -0.200 4.200 17 C -0.048 4.048 18 C -0.163 4.163 19 O -0.115 6.115 20 H 0.136 0.864 21 H 0.134 0.866 22 H 0.131 0.869 23 H 0.126 0.874 24 H 0.213 0.787 25 H 0.065 0.935 26 H 0.162 0.838 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.376 -7.908 -0.002 13.046 hybrid contribution -1.297 0.292 -0.006 1.330 sum -11.673 -7.616 -0.008 13.938 Atomic orbital electron populations 1.20705 0.76968 1.06985 1.06725 1.27609 0.98338 0.77937 0.92649 1.70548 1.01251 1.30734 1.24253 1.19456 0.91402 0.91953 1.01686 1.19089 0.88389 0.98321 1.20509 1.17752 0.85320 0.92317 0.95829 1.41005 1.02832 1.06991 1.69130 1.20872 0.84814 0.94876 1.51845 0.87306 1.27986 1.05961 0.96580 0.95011 1.71028 1.29232 1.07694 1.48603 0.82601 0.69697 0.73722 0.78451 1.21218 1.18874 1.18884 1.20688 0.98113 0.91775 1.09380 1.19752 0.86006 1.00454 0.98617 1.20088 0.84128 0.94110 1.17971 1.84331 1.15216 1.36202 1.75777 0.86429 0.86550 0.86867 0.87365 0.78692 0.93518 0.83758 0.82276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.51 71.23 0.75 -0.13 15 2 C 0.25 7.54 8.23 88.39 0.73 8.27 15 3 N -0.53 -20.96 11.34 -296.31 -3.36 -24.32 15 4 C 0.07 2.88 7.23 39.30 0.28 3.17 15 5 C -0.23 -10.78 9.94 22.64 0.23 -10.56 15 6 C 0.21 9.61 6.61 38.31 0.25 9.86 15 7 N -0.59 -29.92 5.43 -184.32 -1.00 -30.93 15 8 C -0.40 -20.35 9.55 84.04 0.80 -19.55 15 9 H 0.11 5.21 5.66 -2.91 -0.02 5.19 15 10 C -0.06 -3.05 5.50 84.85 0.47 -2.59 15 11 N -0.93 -52.71 13.70 21.64 0.30 -52.41 15 12 Si 1.14 45.10 29.92 68.60 2.05 47.15 15 13 H -0.29 -11.74 7.11 99.48 0.71 -11.03 15 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 15 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 16 C -0.18 -7.28 9.29 22.45 0.21 -7.07 15 17 C -0.03 -1.04 10.05 22.28 0.22 -0.82 15 18 C -0.11 -4.46 7.43 22.91 0.17 -4.29 15 19 O -0.22 -7.69 10.77 -10.46 -0.11 -7.81 15 20 H 0.12 1.31 8.14 -2.38 -0.02 1.29 15 21 H 0.12 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.11 4.92 8.06 -2.91 -0.02 4.90 15 24 H 0.38 19.44 6.72 -92.71 -0.62 18.82 15 25 H 0.25 14.45 6.77 -92.71 -0.63 13.82 15 26 H 0.14 5.62 5.93 -2.91 -0.02 5.60 15 27 H 0.16 4.46 8.06 -2.91 -0.02 4.43 15 Total: -1.00 -66.86 242.44 2.72 -64.14 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.73 Total: 27.87 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.11 Total: -23.70 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.06 Total: -107.66 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.11 Total: -7.81 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.05 Total: 47.15 kcal Total: -66.86 2.72 -64.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258687517.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.043 kcal (2) G-P(sol) polarization free energy of solvation -66.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds