Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36826 * 119.99916 * 2 1 4 4 H 1.08005 * 119.99743 * 207.38124 * 3 2 1 5 5 C 1.38762 * 120.00124 * 27.37939 * 3 2 1 6 6 N 1.31612 * 119.99774 * 10.45710 * 5 3 2 7 7 Si 1.86800 * 120.00033 * 190.45013 * 5 3 2 8 8 H 1.48495 * 109.47152 * 60.00353 * 7 5 3 9 9 H 1.48504 * 109.46899 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47163 * 300.00105 * 7 5 3 11 11 C 1.39260 * 119.99765 * 179.97438 * 2 1 3 12 12 C 1.39535 * 119.86132 * 179.97438 * 11 2 1 13 13 C 1.36493 * 120.47347 * 180.27705 * 12 11 2 14 14 C 1.39705 * 119.96342 * 359.50115 * 13 12 11 15 15 N 1.36053 * 133.70117 * 180.19675 * 14 13 12 16 16 C 1.29916 * 108.82566 * 180.27499 * 15 14 13 17 17 O 1.34286 * 110.29815 * 0.02562 * 16 15 14 18 18 C 1.35123 * 108.14403 * 359.97438 * 17 16 15 19 19 C 1.38507 * 133.94127 * 180.02562 * 18 17 16 20 20 H 1.09000 * 109.47037 * 264.87217 * 1 2 3 21 21 H 1.09003 * 109.47059 * 24.88028 * 1 2 3 22 22 H 1.09003 * 109.46714 * 144.87696 * 1 2 3 23 23 H 0.97004 * 119.99773 * 180.02562 * 6 5 3 24 24 H 1.08006 * 119.76020 * 0.02562 * 12 11 2 25 25 H 1.08000 * 120.01467 * 179.72584 * 13 12 11 26 26 H 1.07997 * 124.85479 * 179.97438 * 16 15 14 27 27 H 1.07996 * 120.16738 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1384 1.2373 -0.4302 5 6 1.5719 2.3194 0.5526 6 7 0.4642 2.2179 1.2561 7 14 2.3671 3.9904 0.2982 8 1 2.4314 4.2920 -1.1543 9 1 1.5615 5.0317 0.9853 10 1 3.7408 3.9759 0.8621 11 6 2.1613 -1.2061 0.0005 12 6 3.5566 -1.2027 0.0000 13 6 4.2516 -2.3775 -0.0052 14 6 3.5653 -3.5943 0.0006 15 7 3.9602 -4.8962 0.0012 16 6 2.9051 -5.6543 0.0019 17 8 1.7919 -4.9034 0.0013 18 6 2.1611 -3.6036 0.0006 19 6 1.4644 -2.4065 0.0003 20 1 -0.3633 -0.0919 1.0236 21 1 -0.3633 0.9323 -0.4324 22 1 -0.3633 -0.8406 -0.5913 23 1 0.0605 3.0110 1.6422 24 1 4.0905 -0.2639 -0.0004 25 1 5.3315 -2.3662 -0.0100 26 1 2.9210 -6.7342 0.0021 27 1 0.3845 -2.4071 0.0001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258902921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = 53.012059 kcal Electronic energy + Delta-G solvation = -14056.930051 eV Core-core repulsion = 11588.791101 eV Total energy + Delta-G solvation = -2468.138950 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.18851 -38.17365 -35.32641 -33.60389 -31.89934 -29.85810 -27.94006 -26.71985 -24.11793 -22.44587 -21.20696 -20.63259 -18.08483 -16.78771 -16.46212 -15.73852 -15.64354 -14.78577 -14.00884 -13.60844 -13.46027 -13.21213 -12.64175 -12.03741 -11.59159 -11.37856 -11.34873 -11.02659 -10.95377 -10.67415 -10.54329 -10.25903 -9.60599 -9.34321 -8.58288 -7.94826 -6.78195 -6.49771 -4.01513 1.75904 2.32857 3.02170 3.07076 3.08582 3.35928 3.45577 3.90147 4.53244 4.70529 4.83588 4.91674 5.51746 5.97435 6.08503 6.14136 6.22921 6.30157 6.66713 6.79826 6.91488 7.01871 7.10268 7.14015 7.21425 7.30367 7.51702 7.77445 8.38495 8.49846 9.00162 9.32642 10.38929 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059353 B = 0.007613 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.637068 B = 3676.906734 C = 4077.943990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.421 5.421 3 C -0.317 4.317 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.866 5.866 7 Si 0.932 3.068 8 H -0.271 1.271 9 H -0.281 1.281 10 H -0.269 1.269 11 C 0.233 3.767 12 C -0.181 4.181 13 C -0.016 4.016 14 C -0.104 4.104 15 N -0.463 5.463 16 C 0.144 3.856 17 O -0.236 6.236 18 C 0.087 3.913 19 C -0.258 4.258 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.034 0.966 23 H 0.274 0.726 24 H 0.131 0.869 25 H 0.117 0.883 26 H 0.236 0.764 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -4.696 -2.012 5.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.103 5.103 3 C -0.445 4.445 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.500 5.500 7 Si 0.757 3.243 8 H -0.196 1.196 9 H -0.206 1.206 10 H -0.194 1.194 11 C 0.110 3.890 12 C -0.204 4.204 13 C -0.036 4.036 14 C -0.218 4.218 15 N -0.192 5.192 16 C -0.087 4.087 17 O -0.128 6.128 18 C 0.036 3.964 19 C -0.285 4.285 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.149 0.851 25 H 0.135 0.865 26 H 0.252 0.748 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.426 -4.377 -1.887 4.975 hybrid contribution -0.472 0.872 0.032 0.992 sum 0.954 -3.505 -1.855 4.078 Atomic orbital electron populations 1.21557 0.80161 1.00239 1.00950 1.42674 1.04765 1.01989 1.60871 1.19640 1.02775 0.85002 1.37082 0.88225 1.25487 0.96647 1.00645 0.94529 1.70058 1.19044 1.30882 1.30005 0.85897 0.79229 0.80253 0.78875 1.19568 1.20614 1.19404 1.17583 0.91010 0.85502 0.94860 1.20323 0.92545 0.97758 1.09763 1.19577 0.98552 0.88750 0.96771 1.19250 0.91342 0.91314 1.19926 1.70176 1.30790 1.01842 1.16357 1.27413 0.77988 0.98506 1.04802 1.84392 1.36357 1.16035 1.76043 1.19825 0.94170 0.82670 0.99764 1.18600 0.98518 0.86566 1.24841 0.92607 0.90683 0.94773 0.91556 0.85086 0.86463 0.74808 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 8.30 59.85 0.50 3.02 15 2 N -0.42 -10.07 3.11 -120.47 -0.38 -10.45 15 3 C -0.32 -7.73 8.88 -15.13 -0.13 -7.87 15 4 H 0.10 2.32 6.30 -52.48 -0.33 1.99 15 5 C 0.03 0.80 5.07 -17.45 -0.09 0.71 15 6 N -0.87 -21.63 10.90 55.49 0.60 -21.02 15 7 Si 0.93 18.64 29.57 -169.99 -5.03 13.62 15 8 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 9 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 10 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 11 C 0.23 5.33 6.52 -83.79 -0.55 4.78 15 12 C -0.18 -3.86 9.19 -39.73 -0.37 -4.23 15 13 C -0.02 -0.32 10.04 -39.66 -0.40 -0.72 15 14 C -0.10 -2.24 7.24 -84.63 -0.61 -2.85 15 15 N -0.46 -9.19 11.33 -12.47 -0.14 -9.33 15 16 C 0.14 2.39 13.13 51.95 0.68 3.08 15 17 O -0.24 -4.59 10.78 3.45 0.04 -4.55 15 18 C 0.09 1.88 7.42 -38.66 -0.29 1.60 15 19 C -0.26 -5.69 9.21 -39.27 -0.36 -6.05 15 20 H 0.06 1.28 7.82 -51.93 -0.41 0.88 15 21 H 0.07 1.71 6.89 -51.93 -0.36 1.35 15 22 H 0.03 0.67 6.47 -51.93 -0.34 0.33 15 23 H 0.27 6.49 8.31 -40.82 -0.34 6.16 15 24 H 0.13 2.67 6.21 -52.48 -0.33 2.34 15 25 H 0.12 2.07 8.06 -52.49 -0.42 1.65 15 26 H 0.24 2.43 8.06 -52.49 -0.42 2.01 15 27 H 0.12 2.44 6.23 -52.49 -0.33 2.12 15 LS Contribution 236.36 15.07 3.56 3.56 Total: -1.00 -27.96 236.36 -5.02 -32.98 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.06 Total: 3.72 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -1.61 Total: -8.53 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.09 Total: -40.80 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.04 Total: -4.55 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.96 -5.02 -32.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258902921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.992 kcal (2) G-P(sol) polarization free energy of solvation -27.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds