Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36826 * 119.99916 * 2 1 4 4 H 1.08005 * 119.99743 * 207.38124 * 3 2 1 5 5 C 1.38762 * 120.00124 * 27.37939 * 3 2 1 6 6 N 1.31612 * 119.99774 * 10.45710 * 5 3 2 7 7 Si 1.86800 * 120.00033 * 190.45013 * 5 3 2 8 8 H 1.48495 * 109.47152 * 60.00353 * 7 5 3 9 9 H 1.48504 * 109.46899 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47163 * 300.00105 * 7 5 3 11 11 C 1.39260 * 119.99765 * 179.97438 * 2 1 3 12 12 C 1.39535 * 119.86132 * 179.97438 * 11 2 1 13 13 C 1.36493 * 120.47347 * 180.27705 * 12 11 2 14 14 C 1.39705 * 119.96342 * 359.50115 * 13 12 11 15 15 N 1.36053 * 133.70117 * 180.19675 * 14 13 12 16 16 C 1.29916 * 108.82566 * 180.27499 * 15 14 13 17 17 O 1.34286 * 110.29815 * 0.02562 * 16 15 14 18 18 C 1.35123 * 108.14403 * 359.97438 * 17 16 15 19 19 C 1.38507 * 133.94127 * 180.02562 * 18 17 16 20 20 H 1.09000 * 109.47037 * 264.87217 * 1 2 3 21 21 H 1.09003 * 109.47059 * 24.88028 * 1 2 3 22 22 H 1.09003 * 109.46714 * 144.87696 * 1 2 3 23 23 H 0.97004 * 119.99773 * 180.02562 * 6 5 3 24 24 H 1.08006 * 119.76020 * 0.02562 * 12 11 2 25 25 H 1.08000 * 120.01467 * 179.72584 * 13 12 11 26 26 H 1.07997 * 124.85479 * 179.97438 * 16 15 14 27 27 H 1.07996 * 120.16738 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.1384 1.2373 -0.4302 5 6 1.5719 2.3194 0.5526 6 7 0.4642 2.2179 1.2561 7 14 2.3671 3.9904 0.2982 8 1 2.4314 4.2920 -1.1543 9 1 1.5615 5.0317 0.9853 10 1 3.7408 3.9759 0.8621 11 6 2.1613 -1.2061 0.0005 12 6 3.5566 -1.2027 0.0000 13 6 4.2516 -2.3775 -0.0052 14 6 3.5653 -3.5943 0.0006 15 7 3.9602 -4.8962 0.0012 16 6 2.9051 -5.6543 0.0019 17 8 1.7919 -4.9034 0.0013 18 6 2.1611 -3.6036 0.0006 19 6 1.4644 -2.4065 0.0003 20 1 -0.3633 -0.0919 1.0236 21 1 -0.3633 0.9323 -0.4324 22 1 -0.3633 -0.8406 -0.5913 23 1 0.0605 3.0110 1.6422 24 1 4.0905 -0.2639 -0.0004 25 1 5.3315 -2.3662 -0.0100 26 1 2.9210 -6.7342 0.0021 27 1 0.3845 -2.4071 0.0001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258902921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = 34.411687 kcal Electronic energy + Delta-G solvation = -14057.736623 eV Core-core repulsion = 11588.791101 eV Total energy + Delta-G solvation = -2468.945522 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.75987 -39.86384 -36.99708 -35.19748 -33.63182 -31.52797 -29.59617 -28.46093 -25.81167 -24.05873 -22.80787 -22.27355 -19.78587 -18.34827 -18.19790 -17.30900 -17.24014 -16.46844 -15.64214 -15.22878 -15.12299 -14.84388 -14.31117 -13.67074 -13.25766 -13.04468 -13.01150 -12.71850 -12.60036 -12.29305 -12.13358 -11.91517 -11.21111 -11.05406 -10.29759 -9.59634 -8.52885 -8.23367 -5.84986 0.20424 0.63209 1.44245 1.46454 1.54266 1.81952 1.93115 2.27197 2.82236 3.06540 3.17041 3.44771 3.91134 4.39564 4.48054 4.50171 4.61956 4.63208 4.90420 5.13609 5.24968 5.32284 5.38949 5.45043 5.52951 5.66660 5.88718 6.04942 6.62999 6.94590 7.26332 7.57703 8.63798 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059353 B = 0.007613 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.637068 B = 3676.906734 C = 4077.943990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.449 5.449 3 C -0.336 4.336 4 H 0.103 0.897 5 C -0.010 4.010 6 N -0.900 5.900 7 Si 0.996 3.004 8 H -0.266 1.266 9 H -0.282 1.282 10 H -0.265 1.265 11 C 0.218 3.782 12 C -0.191 4.191 13 C -0.015 4.015 14 C -0.110 4.110 15 N -0.496 5.496 16 C 0.186 3.814 17 O -0.238 6.238 18 C 0.063 3.937 19 C -0.259 4.259 20 H 0.037 0.963 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.273 0.727 24 H 0.136 0.864 25 H 0.144 0.856 26 H 0.299 0.701 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 -6.435 -2.390 7.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.134 5.134 3 C -0.464 4.464 4 H 0.120 0.880 5 C -0.212 4.212 6 N -0.536 5.536 7 Si 0.819 3.181 8 H -0.190 1.190 9 H -0.207 1.207 10 H -0.189 1.189 11 C 0.099 3.901 12 C -0.214 4.214 13 C -0.035 4.035 14 C -0.223 4.223 15 N -0.224 5.224 16 C -0.046 4.046 17 O -0.131 6.131 18 C 0.012 3.988 19 C -0.287 4.287 20 H 0.055 0.945 21 H 0.080 0.920 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.153 0.847 25 H 0.161 0.839 26 H 0.314 0.686 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.499 -6.141 -2.274 7.009 hybrid contribution -0.731 0.984 0.136 1.234 sum 1.767 -5.157 -2.138 5.856 Atomic orbital electron populations 1.21354 0.79964 1.00227 0.99949 1.42748 1.05028 1.02139 1.63444 1.19905 1.03267 0.85703 1.37546 0.87963 1.26285 0.97138 1.03628 0.94147 1.70168 1.20476 1.31467 1.31497 0.84931 0.78278 0.76112 0.78792 1.19039 1.20737 1.18945 1.17905 0.91856 0.85639 0.94727 1.20439 0.92139 0.98515 1.10297 1.19844 0.99890 0.88100 0.95652 1.19611 0.91425 0.92487 1.18798 1.70249 1.31933 1.01127 1.19087 1.28958 0.76283 1.00413 0.98921 1.84429 1.37573 1.15268 1.75824 1.19924 0.94497 0.83464 1.00917 1.18728 0.98914 0.86818 1.24201 0.94466 0.92029 0.92875 0.91738 0.84672 0.83866 0.68605 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.86 8.30 127.77 1.06 6.92 15 2 N -0.45 -21.93 3.11 -535.05 -1.67 -23.60 15 3 C -0.34 -16.74 8.88 84.04 0.75 -16.00 15 4 H 0.10 4.83 6.30 -2.91 -0.02 4.82 15 5 C -0.01 -0.48 5.07 84.85 0.43 -0.05 15 6 N -0.90 -46.32 10.90 21.64 0.24 -46.09 15 7 Si 1.00 38.63 29.57 68.60 2.03 40.66 15 8 H -0.27 -9.97 7.11 99.48 0.71 -9.26 15 9 H -0.28 -10.86 7.11 99.48 0.71 -10.15 15 10 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 11 C 0.22 10.05 6.52 38.41 0.25 10.30 15 12 C -0.19 -8.10 9.19 22.18 0.20 -7.89 15 13 C -0.01 -0.58 10.04 22.22 0.22 -0.35 15 14 C -0.11 -4.52 7.24 39.37 0.29 -4.24 15 15 N -0.50 -17.95 11.33 -308.17 -3.49 -21.44 15 16 C 0.19 5.29 13.13 130.53 1.71 7.00 15 17 O -0.24 -8.49 10.78 -10.58 -0.11 -8.60 15 18 C 0.06 2.63 7.42 22.86 0.17 2.80 15 19 C -0.26 -11.35 9.21 22.47 0.21 -11.14 15 20 H 0.04 1.78 7.82 -2.39 -0.02 1.76 15 21 H 0.06 2.91 6.89 -2.39 -0.02 2.90 15 22 H 0.05 2.13 6.47 -2.39 -0.02 2.11 15 23 H 0.27 13.33 8.31 -92.70 -0.77 12.55 15 24 H 0.14 5.52 6.21 -2.91 -0.02 5.50 15 25 H 0.14 4.75 8.06 -2.91 -0.02 4.73 15 26 H 0.30 4.09 8.06 -2.91 -0.02 4.06 15 27 H 0.12 5.07 6.23 -2.91 -0.02 5.05 15 Total: -1.00 -60.38 236.36 3.48 -56.90 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.20 Total: 14.82 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.29 Total: -12.64 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -4.92 Total: -91.13 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.11 Total: -8.60 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -60.38 3.48 -56.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258902921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.307 kcal (2) G-P(sol) polarization free energy of solvation -60.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds