Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35254 * 125.47119 * 2 1 4 4 C 1.40273 * 107.21463 * 179.97438 * 3 2 1 5 5 C 1.38250 * 106.53496 * 0.02562 * 4 3 2 6 6 C 1.41806 * 126.11723 * 179.97438 * 5 4 3 7 7 C 1.39429 * 126.75201 * 359.97438 * 6 5 4 8 8 N 1.32066 * 108.30810 * 180.25846 * 7 6 5 9 9 C 1.33293 * 109.82913 * 359.56294 * 8 7 6 10 10 C 1.39447 * 125.66230 * 180.21439 * 9 8 7 11 11 H 1.07994 * 119.99937 * 174.54875 * 10 9 8 12 12 C 1.40074 * 119.99840 * 354.54655 * 10 9 8 13 13 N 1.30790 * 120.00177 * 6.09504 * 12 10 9 14 14 Si 1.86803 * 119.99856 * 186.10197 * 12 10 9 15 15 H 1.48500 * 109.47401 * 94.98101 * 14 12 10 16 16 H 1.48507 * 109.46841 * 214.98052 * 14 12 10 17 17 H 1.48500 * 109.47009 * 334.97905 * 14 12 10 18 18 N 1.37714 * 108.67730 * 0.43686 * 9 8 7 19 19 H 0.97002 * 126.66083 * 179.73838 * 18 9 8 20 20 O 1.34192 * 125.47472 * 180.31302 * 2 1 3 21 21 H 1.09004 * 109.46854 * 89.99749 * 1 2 3 22 22 H 1.08993 * 109.46890 * 209.99828 * 1 2 3 23 23 H 1.09005 * 109.47142 * 330.00028 * 1 2 3 24 24 H 1.07994 * 126.39320 * 359.96438 * 3 2 1 25 25 H 1.08003 * 126.73065 * 180.02562 * 4 3 2 26 26 H 1.08007 * 125.84758 * 359.97438 * 7 6 5 27 27 H 0.97001 * 119.99969 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2919 1.1015 0.0000 4 6 3.6240 0.6621 0.0006 5 6 3.5825 -0.7198 0.0003 6 6 4.7024 -1.5897 0.0003 7 6 6.0466 -1.2192 -0.0001 8 7 6.7797 -2.3177 -0.0057 9 6 5.9877 -3.3898 0.0005 10 6 6.4160 -4.7169 0.0015 11 1 5.6962 -5.5165 0.0956 12 6 7.7797 -5.0128 -0.1196 13 7 8.6616 -4.0469 -0.1136 14 14 8.3390 -6.7870 -0.2898 15 1 8.5016 -7.1190 -1.7281 16 1 9.6369 -6.9661 0.4094 17 1 7.3232 -7.6863 0.3140 18 7 4.6763 -2.9694 0.0007 19 1 3.8872 -3.5336 0.0010 20 8 2.2858 -1.0928 -0.0060 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9558 2.1278 -0.0005 25 1 4.5086 1.2818 0.0011 26 1 6.4237 -0.2071 -0.0007 27 1 9.6059 -4.2518 -0.1979 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258987252.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = 49.778893 kcal Electronic energy + Delta-G solvation = -13676.078720 eV Core-core repulsion = 11207.799570 eV Total energy + Delta-G solvation = -2468.279150 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.71104 -39.74273 -33.72288 -32.58459 -31.74039 -30.85068 -29.09794 -26.71525 -23.87074 -21.51746 -20.76414 -19.70128 -19.34227 -17.72366 -16.19992 -15.55912 -15.41917 -14.53154 -13.72541 -13.29145 -13.14576 -12.77039 -12.67430 -12.44809 -12.22912 -11.96127 -11.50394 -11.33514 -11.27380 -10.75101 -10.35057 -9.57410 -9.25314 -8.61630 -8.29587 -8.23427 -6.70543 -6.64489 -4.47997 1.95060 2.90600 3.03379 3.06790 3.07274 3.58827 3.83763 3.92409 4.53097 4.61856 5.27263 5.38010 5.53419 5.58491 5.63287 5.84543 6.00971 6.15627 6.43452 6.54623 6.70797 6.96320 6.99374 7.19171 7.37416 7.68510 7.95779 8.00225 8.23636 8.65435 9.13979 9.84422 10.20630 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.070720 B = 0.006280 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.830994 B = 4457.842643 C = 4835.646284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.270 4.270 5 C 0.140 3.860 6 C -0.129 4.129 7 C 0.082 3.918 8 N -0.506 5.506 9 C 0.394 3.606 10 C -0.445 4.445 11 H 0.086 0.914 12 C 0.078 3.922 13 N -0.725 5.725 14 Si 0.920 3.080 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.262 1.262 18 N -0.626 5.626 19 H 0.401 0.599 20 O -0.189 6.189 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.136 0.864 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.905 2.939 -0.099 8.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.131 4.131 3 C -0.201 4.201 4 C -0.290 4.290 5 C 0.088 3.912 6 C -0.238 4.238 7 C -0.082 4.082 8 N -0.227 5.227 9 C 0.156 3.844 10 C -0.483 4.483 11 H 0.104 0.896 12 C -0.148 4.148 13 N -0.347 5.347 14 Si 0.744 3.256 15 H -0.194 1.194 16 H -0.199 1.199 17 H -0.186 1.186 18 N -0.236 5.236 19 H 0.236 0.764 20 O -0.087 6.087 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.097 0.903 24 H 0.154 0.846 25 H 0.158 0.842 26 H 0.167 0.833 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.903 2.712 -0.110 7.418 hybrid contribution -0.967 -0.702 -0.088 1.198 sum -7.870 2.010 -0.198 8.126 Atomic orbital electron populations 1.20074 0.86359 1.02897 1.02316 1.22079 0.93301 0.84351 1.13343 1.21180 0.93097 0.98155 1.07695 1.21521 0.97276 0.92517 1.17721 1.18914 0.79626 0.92444 1.00174 1.17282 0.91936 0.82858 1.31687 1.22845 0.87168 0.98436 0.99707 1.71174 1.29631 0.95607 1.26250 1.20164 0.76952 0.94644 0.92655 1.18263 0.93397 0.89072 1.47616 0.89563 1.25829 0.96133 0.99576 0.93308 1.70043 1.02522 1.33217 1.28958 0.86114 0.78863 0.81399 0.79246 1.19360 1.19922 1.18564 1.43327 1.08579 1.04931 1.66752 0.76378 1.83982 1.16687 1.34814 1.73218 0.91332 0.91542 0.90307 0.84611 0.84210 0.83316 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.41 36.01 0.37 -0.35 15 2 C -0.08 -1.42 7.31 -35.37 -0.26 -1.68 15 3 C -0.18 -3.12 10.76 -39.88 -0.43 -3.55 15 4 C -0.27 -5.26 10.62 -38.81 -0.41 -5.67 15 5 C 0.14 3.07 7.08 -38.21 -0.27 2.80 15 6 C -0.13 -3.09 7.03 -83.28 -0.59 -3.68 15 7 C 0.08 2.03 11.59 -17.01 -0.20 1.83 15 8 N -0.51 -14.09 9.31 -12.11 -0.11 -14.20 15 9 C 0.39 10.61 7.57 -155.38 -1.18 9.44 15 10 C -0.45 -11.50 9.42 -38.44 -0.36 -11.86 15 11 H 0.09 2.04 7.85 -52.49 -0.41 1.62 15 12 C 0.08 1.93 5.49 -17.31 -0.09 1.84 15 13 N -0.72 -19.01 11.88 55.55 0.66 -18.35 15 14 Si 0.92 17.98 29.57 -169.99 -5.03 12.96 15 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 16 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 17 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 18 N -0.63 -15.19 6.34 -9.62 -0.06 -15.25 15 19 H 0.40 8.66 8.96 -40.82 -0.37 8.29 15 20 O -0.19 -3.93 10.68 4.26 0.05 -3.88 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.08 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.14 1.88 8.06 -52.49 -0.42 1.46 15 25 H 0.14 2.48 8.06 -52.48 -0.42 2.05 15 26 H 0.15 3.18 8.06 -52.48 -0.42 2.76 15 27 H 0.28 6.57 8.30 -40.82 -0.34 6.23 15 LS Contribution 250.08 15.07 3.77 3.77 Total: -1.00 -30.07 250.08 -6.58 -36.66 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -2.45 Total: 9.18 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.41 Total: -10.88 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.49 Total: -47.80 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: 0.05 Total: -3.88 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.07 -6.58 -36.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258987252.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.434 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds