Wall clock time and date at job start Mon Mar 30 2020 02:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35254 * 125.47119 * 2 1 4 4 C 1.40273 * 107.21463 * 179.97438 * 3 2 1 5 5 C 1.38250 * 106.53496 * 0.02562 * 4 3 2 6 6 C 1.41806 * 126.11723 * 179.97438 * 5 4 3 7 7 C 1.39429 * 126.75201 * 359.97438 * 6 5 4 8 8 N 1.32066 * 108.30810 * 180.25846 * 7 6 5 9 9 C 1.33293 * 109.82913 * 359.56294 * 8 7 6 10 10 C 1.39447 * 125.66230 * 180.21439 * 9 8 7 11 11 H 1.07994 * 119.99937 * 174.54875 * 10 9 8 12 12 C 1.40074 * 119.99840 * 354.54655 * 10 9 8 13 13 N 1.30790 * 120.00177 * 6.09504 * 12 10 9 14 14 Si 1.86803 * 119.99856 * 186.10197 * 12 10 9 15 15 H 1.48500 * 109.47401 * 94.98101 * 14 12 10 16 16 H 1.48507 * 109.46841 * 214.98052 * 14 12 10 17 17 H 1.48500 * 109.47009 * 334.97905 * 14 12 10 18 18 N 1.37714 * 108.67730 * 0.43686 * 9 8 7 19 19 H 0.97002 * 126.66083 * 179.73838 * 18 9 8 20 20 O 1.34192 * 125.47472 * 180.31302 * 2 1 3 21 21 H 1.09004 * 109.46854 * 89.99749 * 1 2 3 22 22 H 1.08993 * 109.46890 * 209.99828 * 1 2 3 23 23 H 1.09005 * 109.47142 * 330.00028 * 1 2 3 24 24 H 1.07994 * 126.39320 * 359.96438 * 3 2 1 25 25 H 1.08003 * 126.73065 * 180.02562 * 4 3 2 26 26 H 1.08007 * 125.84758 * 359.97438 * 7 6 5 27 27 H 0.97001 * 119.99969 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2919 1.1015 0.0000 4 6 3.6240 0.6621 0.0006 5 6 3.5825 -0.7198 0.0003 6 6 4.7024 -1.5897 0.0003 7 6 6.0466 -1.2192 -0.0001 8 7 6.7797 -2.3177 -0.0057 9 6 5.9877 -3.3898 0.0005 10 6 6.4160 -4.7169 0.0015 11 1 5.6962 -5.5165 0.0956 12 6 7.7797 -5.0128 -0.1196 13 7 8.6616 -4.0469 -0.1136 14 14 8.3390 -6.7870 -0.2898 15 1 8.5016 -7.1190 -1.7281 16 1 9.6369 -6.9661 0.4094 17 1 7.3232 -7.6863 0.3140 18 7 4.6763 -2.9694 0.0007 19 1 3.8872 -3.5336 0.0010 20 8 2.2858 -1.0928 -0.0060 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 1.9558 2.1278 -0.0005 25 1 4.5086 1.2818 0.0011 26 1 6.4237 -0.2071 -0.0007 27 1 9.6059 -4.2518 -0.1979 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258987252.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:22 Heat of formation + Delta-G solvation = 30.772956 kcal Electronic energy + Delta-G solvation = -13676.902880 eV Core-core repulsion = 11207.799570 eV Total energy + Delta-G solvation = -2469.103310 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.27050 -41.61242 -35.54670 -34.04925 -33.27598 -32.71060 -30.74127 -28.34439 -25.52421 -23.12447 -22.50096 -21.42765 -21.03303 -19.50441 -18.01709 -17.10897 -17.10068 -16.04513 -15.33768 -15.13215 -14.85724 -14.22652 -13.83674 -13.73658 -13.69228 -13.59381 -13.08240 -12.92258 -12.59545 -12.56431 -11.92178 -11.32331 -10.79316 -10.51213 -10.16718 -9.97452 -8.50818 -8.39869 -6.37988 0.31320 1.38182 1.43860 1.59452 1.59867 2.11980 2.16266 2.21564 2.68677 2.79018 3.44866 4.03290 4.20588 4.28519 4.39289 4.57353 4.75505 4.79502 4.94858 5.00803 5.13189 5.20448 5.42807 5.50521 5.77112 5.90710 6.10658 6.38083 6.38646 6.79097 7.27736 7.96092 8.44092 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.070720 B = 0.006280 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.830994 B = 4457.842643 C = 4835.646284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.245 4.245 5 C 0.084 3.916 6 C -0.114 4.114 7 C 0.044 3.956 8 N -0.546 5.546 9 C 0.362 3.638 10 C -0.478 4.478 11 H 0.098 0.902 12 C 0.032 3.968 13 N -0.773 5.773 14 Si 1.003 2.997 15 H -0.264 1.264 16 H -0.267 1.267 17 H -0.252 1.252 18 N -0.621 5.621 19 H 0.409 0.591 20 O -0.205 6.205 21 H 0.089 0.911 22 H 0.073 0.927 23 H 0.111 0.889 24 H 0.176 0.824 25 H 0.154 0.846 26 H 0.170 0.830 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 3.595 -0.179 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C -0.214 4.214 4 C -0.265 4.265 5 C 0.033 3.967 6 C -0.224 4.224 7 C -0.116 4.116 8 N -0.268 5.268 9 C 0.122 3.878 10 C -0.517 4.517 11 H 0.116 0.884 12 C -0.190 4.190 13 N -0.397 5.397 14 Si 0.822 3.178 15 H -0.188 1.188 16 H -0.192 1.192 17 H -0.176 1.176 18 N -0.231 5.231 19 H 0.246 0.754 20 O -0.103 6.103 21 H 0.107 0.893 22 H 0.092 0.908 23 H 0.129 0.871 24 H 0.193 0.807 25 H 0.172 0.828 26 H 0.188 0.812 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.167 3.405 -0.187 9.780 hybrid contribution -0.644 -0.603 -0.059 0.885 sum -9.811 2.802 -0.245 10.206 Atomic orbital electron populations 1.20390 0.82333 1.04882 1.04227 1.23327 0.95546 0.83549 1.09096 1.21649 0.91663 1.00155 1.07935 1.22006 0.99276 0.91711 1.13544 1.18868 0.79815 0.93086 1.04943 1.17635 0.92750 0.82886 1.29148 1.23162 0.87589 0.98876 1.01948 1.71062 1.31031 0.96677 1.28036 1.20536 0.77715 0.95232 0.94333 1.18690 0.94659 0.89116 1.49198 0.88438 1.26887 0.95591 1.04404 0.92098 1.70153 1.03093 1.35916 1.30495 0.84892 0.78475 0.75106 0.79296 1.18830 1.19186 1.17583 1.43373 1.08412 1.05400 1.65948 0.75399 1.83976 1.16552 1.36630 1.73177 0.89284 0.90834 0.87090 0.80666 0.82810 0.81247 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.41 71.24 0.74 -0.46 15 2 C -0.07 -2.06 7.31 25.00 0.18 -1.87 15 3 C -0.20 -5.92 10.76 22.08 0.24 -5.68 15 4 C -0.24 -9.01 10.62 22.77 0.24 -8.77 15 5 C 0.08 3.62 7.08 23.16 0.16 3.78 15 6 C -0.11 -5.61 7.03 39.34 0.28 -5.33 15 7 C 0.04 2.26 11.59 84.94 0.98 3.24 15 8 N -0.55 -31.90 9.31 -192.23 -1.79 -33.69 15 9 C 0.36 20.38 7.57 133.30 1.01 21.39 15 10 C -0.48 -25.60 9.42 23.01 0.22 -25.38 15 11 H 0.10 4.73 7.85 -2.91 -0.02 4.71 15 12 C 0.03 1.63 5.49 85.29 0.47 2.10 15 13 N -0.77 -42.19 11.88 21.85 0.26 -41.93 15 14 Si 1.00 37.38 29.57 68.60 2.03 39.41 15 15 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 16 H -0.27 -9.53 7.11 99.48 0.71 -8.83 15 17 H -0.25 -8.90 7.11 99.48 0.71 -8.19 15 18 N -0.62 -31.18 6.34 -184.36 -1.17 -32.34 15 19 H 0.41 18.24 8.96 -92.71 -0.83 17.41 15 20 O -0.20 -8.19 10.68 -7.66 -0.08 -8.27 15 21 H 0.09 1.46 8.14 -2.38 -0.02 1.44 15 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.11 1.50 8.14 -2.38 -0.02 1.48 15 24 H 0.18 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.15 5.12 8.06 -2.91 -0.02 5.10 15 26 H 0.17 7.49 8.06 -2.91 -0.02 7.47 15 27 H 0.28 13.94 8.30 -92.71 -0.77 13.17 15 Total: -1.00 -67.79 250.08 4.14 -63.65 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.37 Total: 30.16 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.52 Total: -16.98 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -2.70 Total: -107.97 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.08 Total: -8.27 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -67.79 4.14 -63.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258987252.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.427 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds