Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30552 * 125.27728 * 2 1 4 4 C 1.33752 * 109.10398 * 179.97438 * 3 2 1 5 5 C 1.37905 * 107.23895 * 0.02562 * 4 3 2 6 6 C 1.46231 * 126.76047 * 179.97438 * 5 4 3 7 7 C 1.39180 * 125.84465 * 0.02562 * 6 5 4 8 8 C 1.38224 * 107.88678 * 179.97438 * 7 6 5 9 9 C 1.40135 * 107.62472 * 359.97438 * 8 7 6 10 10 C 1.39554 * 126.06381 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00195 * 180.02562 * 10 9 8 12 12 C 1.39987 * 119.99917 * 0.02562 * 10 9 8 13 13 N 1.30914 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99927 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47082 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47047 * 119.99980 * 14 12 10 17 17 H 1.48501 * 109.47254 * 239.99876 * 14 12 10 18 18 N 1.37580 * 125.84185 * 179.97438 * 6 5 4 19 19 H 0.97001 * 125.85116 * 0.02775 * 18 6 5 20 20 O 1.33968 * 125.28382 * 180.28019 * 2 1 3 21 21 H 1.09000 * 109.46646 * 90.02704 * 1 2 3 22 22 H 1.09004 * 109.47118 * 210.02527 * 1 2 3 23 23 H 1.08994 * 109.47367 * 330.02899 * 1 2 3 24 24 H 1.08000 * 126.38022 * 180.02562 * 4 3 2 25 25 H 1.07999 * 126.05237 * 0.02739 * 7 6 5 26 26 H 1.08002 * 126.18488 * 180.25710 * 8 7 6 27 27 H 0.96999 * 119.99645 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2610 1.0658 0.0000 4 6 3.5455 0.6932 0.0006 5 6 3.5712 -0.6856 0.0003 6 6 4.7588 -1.5388 0.0003 7 6 6.0790 -1.0981 0.0009 8 6 6.8982 -2.2114 0.0011 9 6 6.0739 -3.3447 0.0013 10 6 6.5031 -4.6726 0.0010 11 1 5.7791 -5.4741 0.0007 12 6 7.8719 -4.9658 0.0011 13 7 8.7494 -3.9944 0.0020 14 14 8.4463 -6.7433 0.0015 15 1 7.2663 -7.6448 0.0010 16 1 9.2646 -6.9993 -1.2108 17 1 9.2646 -6.9989 1.2141 18 7 4.7623 -2.9146 0.0005 19 1 3.9775 -3.4847 0.0004 20 8 2.2808 -1.0936 -0.0053 21 1 -0.3632 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5133 24 1 4.4030 1.3499 0.0011 25 1 6.4054 -0.0686 0.0019 26 1 7.9782 -2.2083 0.0055 27 1 9.6979 -4.1976 0.0025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259600279.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = 24.436946 kcal Electronic energy + Delta-G solvation = -13646.773307 eV Core-core repulsion = 11177.395248 eV Total energy + Delta-G solvation = -2469.378060 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.95239 -40.83116 -35.68829 -35.61976 -33.13745 -31.46788 -30.65264 -28.65019 -25.60892 -23.59860 -22.41644 -21.20482 -20.84819 -19.67135 -18.02119 -17.62755 -17.16678 -16.36008 -15.05075 -14.81261 -14.56948 -14.31394 -14.04640 -13.79056 -13.68507 -13.45770 -13.26416 -12.92427 -12.51361 -12.22692 -12.13503 -11.70579 -11.57881 -11.32476 -10.17017 -9.39921 -8.56040 -8.50285 -6.23914 0.16799 1.32588 1.42832 1.58489 1.62261 1.80434 2.08821 2.18885 2.59290 2.83196 3.32863 3.33385 4.10921 4.26272 4.56340 4.67670 4.71141 4.78424 4.90717 5.07318 5.15731 5.18920 5.55469 5.65747 5.80807 6.06318 6.15875 6.70453 6.80466 6.84902 7.03556 7.33538 8.33715 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.069968 B = 0.006175 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.089172 B = 4533.614821 C = 4918.559492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.136 3.864 3 N -0.490 5.490 4 C -0.090 4.090 5 C 0.062 3.938 6 C -0.085 4.085 7 C -0.114 4.114 8 C -0.309 4.309 9 C 0.220 3.780 10 C -0.475 4.475 11 H 0.083 0.917 12 C 0.032 3.968 13 N -0.814 5.814 14 Si 1.005 2.995 15 H -0.258 1.258 16 H -0.265 1.265 17 H -0.264 1.264 18 N -0.595 5.595 19 H 0.404 0.596 20 O -0.225 6.225 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.112 0.888 24 H 0.193 0.807 25 H 0.137 0.863 26 H 0.153 0.847 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 0.709 0.013 7.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.068 4.068 3 N -0.219 5.219 4 C -0.230 4.230 5 C 0.009 3.991 6 C -0.188 4.188 7 C -0.140 4.140 8 C -0.331 4.331 9 C 0.106 3.894 10 C -0.509 4.509 11 H 0.101 0.899 12 C -0.184 4.184 13 N -0.440 5.440 14 Si 0.825 3.175 15 H -0.182 1.182 16 H -0.189 1.189 17 H -0.189 1.189 18 N -0.199 5.199 19 H 0.240 0.760 20 O -0.115 6.115 21 H 0.123 0.877 22 H 0.118 0.882 23 H 0.130 0.870 24 H 0.209 0.791 25 H 0.154 0.846 26 H 0.170 0.830 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.019 1.374 0.012 8.136 hybrid contribution 0.460 -1.402 -0.009 1.475 sum -7.559 -0.027 0.002 7.559 Atomic orbital electron populations 1.20407 0.78057 1.06061 1.05692 1.27167 0.97929 0.77870 1.03874 1.70028 1.02509 1.30796 1.18564 1.23443 0.95028 0.91449 1.13097 1.21162 0.80246 0.93822 1.03886 1.17278 0.89610 0.82015 1.29894 1.21088 0.89927 0.98721 1.04219 1.21893 1.00094 0.90175 1.20895 1.18657 0.80968 0.95003 0.94789 1.18933 0.93801 0.90784 1.47385 0.89919 1.26761 0.95622 1.04588 0.91469 1.69806 1.03811 1.35261 1.35160 0.84808 0.78780 0.74984 0.78956 1.18164 1.18929 1.18916 1.42046 1.07092 1.05041 1.65730 0.76040 1.84401 1.16777 1.38445 1.71846 0.87719 0.88213 0.86990 0.79052 0.84551 0.83005 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.88 10.51 71.24 0.75 -0.14 15 2 C 0.14 4.57 8.30 88.30 0.73 5.30 15 3 N -0.49 -18.40 11.25 -301.35 -3.39 -21.78 15 4 C -0.09 -3.60 11.71 84.32 0.99 -2.61 15 5 C 0.06 2.71 7.34 24.27 0.18 2.88 15 6 C -0.08 -4.06 7.12 40.55 0.29 -3.77 15 7 C -0.11 -5.54 10.55 22.49 0.24 -5.30 15 8 C -0.31 -16.60 9.73 22.73 0.22 -16.38 15 9 C 0.22 11.73 6.86 38.94 0.27 12.00 15 10 C -0.47 -24.36 9.43 23.01 0.22 -24.15 15 11 H 0.08 3.97 7.85 -2.91 -0.02 3.94 15 12 C 0.03 1.52 5.50 85.25 0.47 1.99 15 13 N -0.81 -40.57 10.21 21.84 0.22 -40.35 15 14 Si 1.00 36.00 29.56 68.60 2.03 38.03 15 15 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 16 H -0.26 -9.11 7.11 99.48 0.71 -8.41 15 17 H -0.26 -9.11 7.11 99.48 0.71 -8.40 15 18 N -0.59 -28.94 6.22 -175.84 -1.09 -30.04 15 19 H 0.40 17.61 8.96 -92.71 -0.83 16.78 15 20 O -0.22 -8.98 10.80 -9.80 -0.11 -9.08 15 21 H 0.10 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.10 1.59 8.14 -2.38 -0.02 1.57 15 23 H 0.11 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.19 6.76 8.06 -2.91 -0.02 6.74 15 25 H 0.14 5.75 8.06 -2.91 -0.02 5.73 15 26 H 0.15 8.45 5.63 -2.91 -0.02 8.43 15 27 H 0.29 12.88 8.30 -92.71 -0.77 12.11 15 Total: -1.00 -62.14 247.69 2.38 -59.75 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.38 Total: 33.63 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 4.35 Total: -30.16 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -4.26 Total: -92.17 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.11 Total: -9.08 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Total: -62.14 2.38 -59.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259600279.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.189 kcal (2) G-P(sol) polarization free energy of solvation -62.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds