Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35373 * 116.99951 * 2 1 4 4 C 1.35883 * 119.75735 * 175.06033 * 3 2 1 5 5 C 1.40029 * 120.20898 * 180.02562 * 4 3 2 6 6 C 1.36297 * 119.81867 * 359.94794 * 5 4 3 7 7 C 1.40832 * 119.55355 * 0.03790 * 6 5 4 8 8 N 1.32581 * 131.61545 * 179.97438 * 7 6 5 9 9 C 1.34800 * 109.20083 * 180.02562 * 8 7 6 10 10 C 1.41286 * 126.14895 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99939 * 180.02562 * 10 9 8 12 12 C 1.39646 * 120.00381 * 0.02562 * 10 9 8 13 13 N 1.31027 * 119.99601 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00323 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47627 * 119.99858 * 14 12 10 17 17 H 1.48498 * 109.47147 * 240.00015 * 14 12 10 18 18 C 1.39383 * 107.69520 * 359.97438 * 9 8 7 19 19 N 1.36389 * 106.71318 * 0.02562 * 18 9 8 20 20 H 1.09000 * 109.47104 * 186.29641 * 1 2 3 21 21 H 1.09004 * 109.47007 * 306.29385 * 1 2 3 22 22 H 1.08999 * 109.47490 * 66.29594 * 1 2 3 23 23 H 1.08007 * 119.89661 * 0.02562 * 4 3 2 24 24 H 1.08002 * 120.09454 * 180.02562 * 5 4 3 25 25 H 1.07999 * 120.22531 * 180.31792 * 6 5 4 26 26 H 0.97000 * 119.99946 * 180.02562 * 13 12 10 27 27 H 1.08001 * 126.64175 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3969 1.2736 0.1016 5 6 4.0424 2.5162 0.1031 6 6 3.3094 3.6608 0.0012 7 6 1.9073 3.5807 -0.1040 8 7 0.9774 4.5194 -0.2125 9 6 -0.2357 3.9358 -0.2828 10 6 -1.4754 4.6023 -0.4049 11 1 -2.3921 4.0333 -0.4525 12 6 -1.5156 5.9970 -0.4641 13 7 -0.4035 6.6874 -0.4059 14 14 -3.1547 6.8782 -0.6248 15 1 -4.2520 5.8785 -0.6691 16 1 -3.3501 7.7769 0.5410 17 1 -3.1653 7.6797 -1.8749 18 6 -0.0468 2.5565 -0.2144 19 7 1.2966 2.3496 -0.1027 20 1 -0.3633 -1.0215 0.1127 21 1 -0.3633 0.6083 0.8283 22 1 -0.3634 0.4131 -0.9409 23 1 3.9767 0.3658 0.1814 24 1 5.1182 2.5676 0.1835 25 1 3.8008 4.6225 -0.0035 26 1 -0.4314 7.6561 -0.4466 27 1 -0.8155 1.7984 -0.2442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259680303.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = 64.638415 kcal Electronic energy + Delta-G solvation = -14271.899484 eV Core-core repulsion = 11804.264691 eV Total energy + Delta-G solvation = -2467.634793 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.44141 -38.31949 -35.80364 -33.37545 -31.70189 -29.42301 -28.76056 -26.29639 -25.15798 -22.28716 -21.52485 -20.41266 -17.34353 -16.98135 -16.14513 -15.91665 -15.37171 -14.75481 -14.27334 -14.00898 -13.85062 -13.28024 -12.74818 -11.68122 -11.63243 -11.58457 -11.23111 -11.21471 -10.63950 -10.39849 -10.22289 -10.09029 -9.73730 -9.04898 -8.28399 -7.54696 -6.49226 -6.43385 -4.36364 1.80028 2.36172 3.04989 3.13106 3.17354 3.41162 3.67486 4.02279 4.08613 4.67619 5.30979 5.42662 5.44116 5.59350 5.66644 5.69665 5.85861 6.06713 6.17429 6.57544 6.75005 7.03436 7.09762 7.19978 7.26790 7.58247 7.71597 8.13395 8.47108 8.78154 8.96942 9.70922 10.42016 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.009170 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.836994 B = 3052.749159 C = 3696.071778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.316 6.316 3 C 0.285 3.715 4 C -0.230 4.230 5 C -0.092 4.092 6 C -0.130 4.130 7 C 0.229 3.771 8 N -0.468 5.468 9 C 0.242 3.758 10 C -0.439 4.439 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.749 5.749 14 Si 0.911 3.089 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.299 4.299 19 N -0.374 5.374 20 H 0.093 0.907 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.135 0.865 24 H 0.128 0.872 25 H 0.135 0.865 26 H 0.273 0.727 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.236 -7.160 0.670 7.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.226 6.226 3 C 0.134 3.866 4 C -0.254 4.254 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.013 4.013 8 N -0.192 5.192 9 C 0.118 3.882 10 C -0.472 4.472 11 H 0.102 0.898 12 C -0.150 4.150 13 N -0.373 5.373 14 Si 0.735 3.265 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.200 1.200 18 C -0.424 4.424 19 N -0.060 5.060 20 H 0.111 0.889 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.153 0.847 24 H 0.146 0.854 25 H 0.152 0.848 26 H 0.084 0.916 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.390 -6.307 0.635 6.774 hybrid contribution -1.142 -0.404 -0.070 1.214 sum 1.248 -6.711 0.565 6.849 Atomic orbital electron populations 1.23722 0.77923 1.03380 1.02925 1.86019 1.22001 1.24960 1.89624 1.19212 0.89841 0.77026 1.00553 1.19342 0.88645 0.99270 1.18111 1.20360 0.99169 0.90684 1.01383 1.19966 0.88950 0.99226 1.07087 1.21632 0.95099 0.79424 1.05141 1.71751 0.97983 1.25261 1.24231 1.18519 0.91796 0.86935 0.90964 1.18717 0.91300 0.91081 1.46071 0.89796 1.25920 0.97744 0.98011 0.93348 1.70119 1.27365 1.07423 1.32354 0.86230 0.82169 0.79637 0.78440 1.18579 1.19982 1.19986 1.23211 0.81615 0.99395 1.38195 1.43231 1.08220 1.06472 1.48042 0.88880 0.91100 0.91326 0.84721 0.85428 0.84762 0.91616 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.11 101.05 0.92 1.16 15 2 O -0.32 -5.76 10.45 -17.81 -0.19 -5.95 15 3 C 0.28 5.84 7.49 -16.10 -0.12 5.72 15 4 C -0.23 -4.14 9.91 -39.75 -0.39 -4.53 15 5 C -0.09 -1.62 10.05 -39.61 -0.40 -2.01 15 6 C -0.13 -2.72 10.10 -39.30 -0.40 -3.12 15 7 C 0.23 5.82 7.77 -155.74 -1.21 4.61 15 8 N -0.47 -13.52 9.52 -10.34 -0.10 -13.62 15 9 C 0.24 6.83 6.66 -84.98 -0.57 6.26 15 10 C -0.44 -12.02 9.37 -37.90 -0.36 -12.38 15 11 H 0.08 2.12 7.84 -52.49 -0.41 1.71 15 12 C 0.07 1.89 5.49 -17.37 -0.10 1.80 15 13 N -0.75 -20.92 11.93 55.53 0.66 -20.25 15 14 Si 0.91 19.14 29.56 -169.99 -5.02 14.12 15 15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 18 C -0.30 -7.36 9.35 -15.10 -0.14 -7.50 15 19 N -0.37 -8.88 2.94 -61.62 -0.18 -9.06 15 20 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 21 H 0.07 1.17 6.36 -51.93 -0.33 0.84 15 22 H 0.07 1.10 6.43 -51.93 -0.33 0.77 15 23 H 0.13 2.01 8.06 -52.48 -0.42 1.59 15 24 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.13 2.57 8.06 -52.49 -0.42 2.15 15 26 H 0.27 6.91 8.30 -40.82 -0.34 6.57 15 27 H 0.17 3.55 4.55 -52.49 -0.24 3.31 15 LS Contribution 236.81 15.07 3.57 3.57 Total: -1.00 -31.66 236.81 -6.16 -37.82 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.14 Total: 3.37 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -2.76 Total: -9.99 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.38 Total: -42.94 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.19 Total: -5.95 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.66 -6.16 -37.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680303.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.458 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds