Wall clock time and date at job start Mon Mar 30 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35373 * 116.99951 * 2 1 4 4 C 1.35883 * 119.75735 * 175.06033 * 3 2 1 5 5 C 1.40029 * 120.20898 * 180.02562 * 4 3 2 6 6 C 1.36297 * 119.81867 * 359.94794 * 5 4 3 7 7 C 1.40832 * 119.55355 * 0.03790 * 6 5 4 8 8 N 1.32581 * 131.61545 * 179.97438 * 7 6 5 9 9 C 1.34800 * 109.20083 * 180.02562 * 8 7 6 10 10 C 1.41286 * 126.14895 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99939 * 180.02562 * 10 9 8 12 12 C 1.39646 * 120.00381 * 0.02562 * 10 9 8 13 13 N 1.31027 * 119.99601 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00323 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47168 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47627 * 119.99858 * 14 12 10 17 17 H 1.48498 * 109.47147 * 240.00015 * 14 12 10 18 18 C 1.39383 * 107.69520 * 359.97438 * 9 8 7 19 19 N 1.36389 * 106.71318 * 0.02562 * 18 9 8 20 20 H 1.09000 * 109.47104 * 186.29641 * 1 2 3 21 21 H 1.09004 * 109.47007 * 306.29385 * 1 2 3 22 22 H 1.08999 * 109.47490 * 66.29594 * 1 2 3 23 23 H 1.08007 * 119.89661 * 0.02562 * 4 3 2 24 24 H 1.08002 * 120.09454 * 180.02562 * 5 4 3 25 25 H 1.07999 * 120.22531 * 180.31792 * 6 5 4 26 26 H 0.97000 * 119.99946 * 180.02562 * 13 12 10 27 27 H 1.08001 * 126.64175 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2062 0.0000 4 6 3.3969 1.2736 0.1016 5 6 4.0424 2.5162 0.1031 6 6 3.3094 3.6608 0.0012 7 6 1.9073 3.5807 -0.1040 8 7 0.9774 4.5194 -0.2125 9 6 -0.2357 3.9358 -0.2828 10 6 -1.4754 4.6023 -0.4049 11 1 -2.3921 4.0333 -0.4525 12 6 -1.5156 5.9970 -0.4641 13 7 -0.4035 6.6874 -0.4059 14 14 -3.1547 6.8782 -0.6248 15 1 -4.2520 5.8785 -0.6691 16 1 -3.3501 7.7769 0.5410 17 1 -3.1653 7.6797 -1.8749 18 6 -0.0468 2.5565 -0.2144 19 7 1.2966 2.3496 -0.1027 20 1 -0.3633 -1.0215 0.1127 21 1 -0.3633 0.6083 0.8283 22 1 -0.3634 0.4131 -0.9409 23 1 3.9767 0.3658 0.1814 24 1 5.1182 2.5676 0.1835 25 1 3.8008 4.6225 -0.0035 26 1 -0.4314 7.6561 -0.4466 27 1 -0.8155 1.7984 -0.2442 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259680303.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:17 Heat of formation + Delta-G solvation = 43.539257 kcal Electronic energy + Delta-G solvation = -14272.814413 eV Core-core repulsion = 11804.264691 eV Total energy + Delta-G solvation = -2468.549721 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.17530 -39.86359 -37.43894 -35.24248 -33.47899 -31.11768 -30.40863 -27.99503 -26.82065 -23.91208 -23.24246 -22.27420 -19.15956 -18.55622 -17.81671 -17.45534 -17.13166 -16.35843 -15.92733 -15.54939 -15.50725 -14.83984 -14.51498 -13.27199 -13.23180 -13.06249 -12.91273 -12.84616 -12.42087 -12.01687 -11.79427 -11.76356 -11.50909 -10.87501 -10.21338 -9.39679 -8.39694 -8.16394 -6.37139 0.19294 0.69273 1.40334 1.40558 1.57029 1.85266 2.13414 2.27322 2.28321 2.89681 3.58844 3.86507 4.00377 4.14035 4.16505 4.36124 4.46077 4.52669 4.67688 5.03023 5.05575 5.27934 5.44950 5.48786 5.58622 5.79393 6.05444 6.21618 6.66207 6.89194 7.01355 7.81488 8.55016 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.042489 B = 0.009170 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.836994 B = 3052.749159 C = 3696.071778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.312 6.312 3 C 0.265 3.735 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.160 4.160 7 C 0.204 3.796 8 N -0.525 5.525 9 C 0.198 3.802 10 C -0.479 4.479 11 H 0.091 0.909 12 C 0.022 3.978 13 N -0.800 5.800 14 Si 0.994 3.006 15 H -0.251 1.251 16 H -0.269 1.269 17 H -0.269 1.269 18 C -0.304 4.304 19 N -0.381 5.381 20 H 0.140 0.860 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.179 0.821 24 H 0.183 0.817 25 H 0.143 0.857 26 H 0.276 0.724 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -9.176 0.847 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.221 6.221 3 C 0.115 3.885 4 C -0.237 4.237 5 C -0.079 4.079 6 C -0.182 4.182 7 C -0.038 4.038 8 N -0.250 5.250 9 C 0.074 3.926 10 C -0.512 4.512 11 H 0.109 0.891 12 C -0.195 4.195 13 N -0.425 5.425 14 Si 0.814 3.186 15 H -0.174 1.174 16 H -0.194 1.194 17 H -0.194 1.194 18 C -0.429 4.429 19 N -0.067 5.067 20 H 0.157 0.843 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.196 0.804 24 H 0.201 0.799 25 H 0.161 0.839 26 H 0.086 0.914 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.475 -8.382 0.816 9.110 hybrid contribution -1.193 -0.067 -0.090 1.198 sum 2.282 -8.449 0.725 8.782 Atomic orbital electron populations 1.23850 0.76540 1.05972 1.01806 1.86043 1.23301 1.23438 1.89365 1.19891 0.90830 0.76961 1.00819 1.20103 0.87835 1.01225 1.14509 1.21009 1.01558 0.88946 0.96385 1.20317 0.87315 1.01394 1.09144 1.22244 0.96544 0.79732 1.05249 1.71609 0.99013 1.27536 1.26839 1.19064 0.92298 0.88806 0.92460 1.19106 0.91641 0.92320 1.48169 0.89075 1.26938 1.01914 0.98408 0.92220 1.70260 1.30087 1.07743 1.34427 0.84992 0.76924 0.78156 0.78493 1.17389 1.19356 1.19383 1.23541 0.82878 0.98828 1.37615 1.43296 1.07935 1.07187 1.48247 0.84259 0.92532 0.92307 0.80366 0.79932 0.83878 0.91366 0.78883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 9.11 113.37 1.03 1.39 15 2 O -0.31 -10.47 10.45 -86.65 -0.91 -11.37 15 3 C 0.26 10.26 7.49 83.34 0.62 10.88 15 4 C -0.21 -6.70 9.91 22.16 0.22 -6.48 15 5 C -0.06 -1.70 10.05 22.25 0.22 -1.48 15 6 C -0.16 -6.50 10.10 22.45 0.23 -6.28 15 7 C 0.20 10.62 7.77 133.96 1.04 11.66 15 8 N -0.52 -31.92 9.52 -186.64 -1.78 -33.69 15 9 C 0.20 11.80 6.66 39.71 0.26 12.06 15 10 C -0.48 -27.61 9.37 23.36 0.22 -27.39 15 11 H 0.09 4.82 7.84 -2.91 -0.02 4.80 15 12 C 0.02 1.21 5.49 85.15 0.47 1.68 15 13 N -0.80 -47.14 11.93 21.78 0.26 -46.88 15 14 Si 0.99 40.64 29.56 68.60 2.03 42.67 15 15 H -0.25 -9.62 7.11 99.48 0.71 -8.91 15 16 H -0.27 -10.58 7.11 99.48 0.71 -9.88 15 17 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 18 C -0.30 -15.42 9.35 84.26 0.79 -14.63 15 19 N -0.38 -18.16 2.94 -459.39 -1.35 -19.51 15 20 H 0.14 2.71 8.14 -2.39 -0.02 2.70 15 21 H 0.06 1.81 6.36 -2.38 -0.02 1.80 15 22 H 0.06 1.83 6.43 -2.39 -0.02 1.81 15 23 H 0.18 4.11 8.06 -2.91 -0.02 4.09 15 24 H 0.18 3.62 8.06 -2.91 -0.02 3.60 15 25 H 0.14 5.42 8.06 -2.91 -0.02 5.39 15 26 H 0.28 14.75 8.30 -92.71 -0.77 13.98 15 27 H 0.19 8.35 4.55 -2.91 -0.01 8.34 15 Total: -1.00 -74.13 236.81 4.55 -69.57 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 1.19 Total: 17.81 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: 5.11 Total: -18.59 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -2.87 Total: -100.09 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.91 Total: -11.37 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -74.13 4.55 -69.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259680303.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.110 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds