Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37922 * 125.79666 * 2 1 4 4 C 1.39602 * 126.10992 * 359.97438 * 3 2 1 5 5 H 1.08000 * 119.99948 * 335.85419 * 4 3 2 6 6 C 1.40218 * 119.99725 * 155.59070 * 4 3 2 7 7 N 1.30756 * 120.00006 * 165.07834 * 6 4 3 8 8 Si 1.86795 * 119.99981 * 345.07371 * 6 4 3 9 9 H 1.48505 * 109.46959 * 85.37944 * 8 6 4 10 10 H 1.48507 * 109.47281 * 205.37757 * 8 6 4 11 11 H 1.48499 * 109.47438 * 325.37982 * 8 6 4 12 12 C 1.40091 * 107.77863 * 180.25887 * 3 2 1 13 13 C 1.38484 * 107.47363 * 359.61171 * 12 3 2 14 14 C 1.37186 * 125.80378 * 180.02562 * 2 1 3 15 15 C 1.47454 * 125.76843 * 359.97438 * 14 2 1 16 16 C 1.47038 * 127.39792 * 5.02451 * 15 14 2 17 17 C 1.35203 * 103.27456 * 179.90882 * 16 15 14 18 18 O 1.34006 * 106.98851 * 0.34909 * 17 16 15 19 19 N 1.20762 * 113.05045 * 359.75044 * 18 17 16 20 20 H 1.09006 * 109.46914 * 93.52846 * 1 2 3 21 21 H 1.09002 * 109.47519 * 213.52529 * 1 2 3 22 22 H 1.08996 * 109.47341 * 333.53305 * 1 2 3 23 23 H 0.96993 * 120.00582 * 179.97438 * 7 6 4 24 24 H 1.07995 * 126.26202 * 179.72608 * 12 3 2 25 25 H 1.08003 * 126.05735 * 180.14704 * 13 12 3 26 26 H 1.08007 * 128.36520 * 0.02853 * 16 15 14 27 27 H 1.08007 * 126.51065 * 180.10358 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.1187 0.0000 4 6 1.8382 2.4457 -0.0005 5 1 0.8593 2.6938 -0.3835 6 6 2.6714 3.4556 0.5014 7 7 2.4068 4.7098 0.2433 8 14 4.1594 3.0092 1.5387 9 1 5.3105 2.7092 0.6497 10 1 4.5035 4.1486 2.4268 11 1 3.8471 1.8150 2.3642 12 6 3.6039 0.6854 -0.0060 13 6 3.5908 -0.6994 -0.0007 14 6 2.2676 -1.1126 -0.0005 15 6 1.8014 -2.5115 -0.0006 16 6 0.4151 -2.9909 -0.1025 17 6 0.5475 -4.3357 -0.0565 18 8 1.8562 -4.5963 0.0662 19 7 2.5362 -3.5988 0.0962 20 1 -0.3633 -0.0633 -1.0258 21 1 -0.3634 -0.8567 0.5676 22 1 -0.3634 0.9199 0.4580 23 1 2.9829 5.4085 0.5908 24 1 4.4807 1.3159 -0.0117 25 1 4.4579 -1.3434 -0.0010 26 1 -0.4903 -2.4093 -0.1942 27 1 -0.2504 -5.0620 -0.1049 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259689094.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = 101.304152 kcal Electronic energy + Delta-G solvation = -14072.405839 eV Core-core repulsion = 11606.360992 eV Total energy + Delta-G solvation = -2466.044847 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.04631 -39.50576 -33.84791 -33.00698 -31.97334 -31.07482 -29.20453 -25.62612 -24.97213 -22.51117 -21.43545 -19.83848 -18.66017 -17.22279 -16.92541 -16.86078 -15.71005 -14.88913 -14.16083 -13.80034 -13.54953 -13.14827 -12.31614 -12.24348 -11.82610 -11.72956 -11.30150 -11.22166 -10.81395 -10.65543 -10.20248 -9.82840 -9.73664 -9.33618 -9.16053 -7.54725 -6.97512 -6.95738 -4.42768 1.92081 2.26480 3.09271 3.20703 3.33332 3.66537 3.69507 3.95332 4.02169 4.24945 4.91080 4.97736 5.06913 5.46890 5.52755 5.76841 5.91287 6.03347 6.12956 6.48120 6.50849 6.65951 6.93014 7.33566 7.38573 7.68390 8.08150 8.28595 8.40899 8.70023 8.91828 8.97148 10.04761 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054178 B = 0.008401 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.688028 B = 3331.995748 C = 3734.045131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.469 5.469 3 C 0.249 3.751 4 C -0.450 4.450 5 H 0.089 0.911 6 C 0.099 3.901 7 N -0.809 5.809 8 Si 0.923 3.077 9 H -0.265 1.265 10 H -0.296 1.296 11 H -0.248 1.248 12 C -0.349 4.349 13 C -0.086 4.086 14 C -0.066 4.066 15 C 0.131 3.869 16 C -0.257 4.257 17 C -0.067 4.067 18 O 0.070 5.930 19 N -0.387 5.387 20 H 0.051 0.949 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.288 0.712 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.166 0.834 27 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -9.161 0.796 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.154 5.154 3 C 0.136 3.864 4 C -0.485 4.485 5 H 0.107 0.893 6 C -0.122 4.122 7 N -0.435 5.435 8 Si 0.751 3.249 9 H -0.192 1.192 10 H -0.224 1.224 11 H -0.171 1.171 12 C -0.371 4.371 13 C -0.113 4.113 14 C -0.170 4.170 15 C -0.024 4.024 16 C -0.278 4.278 17 C -0.147 4.147 18 O 0.012 5.988 19 N -0.100 5.100 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.142 0.858 25 H 0.135 0.865 26 H 0.184 0.816 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.464 -9.352 0.918 10.015 hybrid contribution -0.429 0.342 0.206 0.586 sum -3.893 -9.010 1.123 9.879 Atomic orbital electron populations 1.21768 0.79608 1.03070 1.01156 1.43758 1.04170 1.04693 1.62785 1.18215 0.88013 0.86205 0.93997 1.18281 1.04467 0.87513 1.38234 0.89256 1.25868 0.98283 0.93913 0.94155 1.69570 1.37335 1.00942 1.35647 0.86200 0.80631 0.78104 0.79993 1.19164 1.22408 1.17135 1.20901 0.95229 0.94185 1.26791 1.20608 0.93262 0.94894 1.02569 1.16839 0.89629 0.81885 1.28640 1.22328 0.88720 0.92514 0.98877 1.23961 0.98042 0.94350 1.11481 1.25647 0.87882 0.97436 1.03767 1.84621 1.15440 1.29928 1.68814 1.74202 1.17602 0.93195 1.24959 0.93055 0.91468 0.90074 0.90149 0.85805 0.86545 0.81629 0.77544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 9.88 59.85 0.59 2.15 15 2 N -0.47 -10.82 3.21 -117.04 -0.38 -11.20 15 3 C 0.25 6.37 6.11 -83.92 -0.51 5.85 15 4 C -0.45 -11.84 9.24 -38.33 -0.35 -12.19 15 5 H 0.09 2.40 7.81 -52.49 -0.41 1.99 15 6 C 0.10 2.53 5.50 -17.27 -0.10 2.44 15 7 N -0.81 -21.01 13.92 55.56 0.77 -20.24 15 8 Si 0.92 21.07 24.69 -169.99 -4.20 16.87 15 9 H -0.27 -5.95 6.31 56.52 0.36 -5.59 15 10 H -0.30 -6.45 7.11 56.52 0.40 -6.05 15 11 H -0.25 -5.90 6.99 56.52 0.39 -5.50 15 12 C -0.35 -8.84 8.27 -38.80 -0.32 -9.16 15 13 C -0.09 -2.08 10.78 -39.35 -0.42 -2.50 15 14 C -0.07 -1.54 6.90 -81.57 -0.56 -2.10 15 15 C 0.13 2.71 7.34 -80.65 -0.59 2.11 15 16 C -0.26 -4.08 9.97 -37.10 -0.37 -4.45 15 17 C -0.07 -0.89 12.26 29.65 0.36 -0.52 15 18 O 0.07 1.18 11.09 17.31 0.19 1.37 15 19 N -0.39 -7.83 12.13 34.32 0.42 -7.42 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.07 1.04 5.55 -51.93 -0.29 0.75 15 22 H 0.08 1.44 7.54 -51.93 -0.39 1.05 15 23 H 0.29 6.79 8.29 -40.82 -0.34 6.45 15 24 H 0.12 3.07 4.54 -52.49 -0.24 2.83 15 25 H 0.12 2.61 8.06 -52.48 -0.42 2.19 15 26 H 0.17 2.22 5.97 -52.48 -0.31 1.91 15 27 H 0.21 1.58 8.06 -52.48 -0.42 1.15 15 LS Contribution 235.67 15.07 3.55 3.55 Total: -1.00 -29.84 235.67 -4.01 -33.85 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.10 Total: 1.58 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -2.28 Total: -18.37 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.81 Total: -38.86 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.19 Total: 1.37 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.20 Total: 16.87 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.84 -4.01 -33.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259689094.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.152 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds