Wall clock time and date at job start Mon Mar 30 2020 02:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35657 * 117.00135 * 2 1 4 4 C 1.41060 * 120.19424 * 0.02562 * 3 2 1 5 5 C 1.34717 * 120.20563 * 179.97438 * 4 3 2 6 6 N 1.36826 * 120.71684 * 0.02562 * 5 4 3 7 7 C 1.36376 * 131.93353 * 180.02562 * 6 5 4 8 8 C 1.39406 * 106.73557 * 179.71426 * 7 6 5 9 9 C 1.41258 * 126.15713 * 180.22953 * 8 7 6 10 10 H 1.07995 * 120.00089 * 359.97438 * 9 8 7 11 11 C 1.39663 * 119.99707 * 180.02562 * 9 8 7 12 12 N 1.31018 * 120.00200 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99515 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47530 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47175 * 119.99856 * 13 11 9 16 16 H 1.48503 * 109.46618 * 239.99514 * 13 11 9 17 17 N 1.34812 * 107.68568 * 0.26889 * 8 7 6 18 18 C 1.32612 * 109.17575 * 359.97438 * 17 8 7 19 19 C 1.36727 * 120.19682 * 180.43793 * 3 2 1 20 20 H 1.09000 * 109.46899 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46811 * 299.99983 * 1 2 3 22 22 H 1.09002 * 109.47009 * 60.00018 * 1 2 3 23 23 H 1.07991 * 119.89799 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.63837 * 180.02562 * 5 4 3 25 25 H 1.08002 * 126.63653 * 359.97438 * 7 6 5 26 26 H 0.96996 * 119.99941 * 180.02562 * 12 11 9 27 27 H 1.08001 * 120.31386 * 359.46826 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2807 2.3943 0.0005 5 6 1.8921 3.5948 0.0011 6 7 3.2575 3.6837 0.0005 7 6 4.1010 4.7553 0.0013 8 6 5.3983 4.2451 0.0069 9 6 6.5913 5.0014 0.0141 10 1 6.5466 6.0804 0.0153 11 6 7.8286 4.3537 0.0185 12 7 7.8828 3.0446 0.0165 13 14 9.4063 5.3539 0.0287 14 1 9.0748 6.8014 0.0301 15 1 10.1932 5.0247 1.2443 16 1 10.2051 5.0306 -1.1807 17 7 5.3093 2.8999 0.0032 18 6 4.0307 2.5480 -0.0037 19 6 3.4100 1.2849 -0.0090 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2022 2.3396 0.0014 24 1 1.2980 4.4967 0.0019 25 1 3.8186 5.7978 0.0022 26 1 8.7422 2.5948 0.0200 27 1 4.0063 0.3844 -0.0076 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259737952.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:47 Heat of formation + Delta-G solvation = 26.241487 kcal Electronic energy + Delta-G solvation = -13888.095490 eV Core-core repulsion = 11418.795681 eV Total energy + Delta-G solvation = -2469.299809 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.85790 -40.20627 -37.05633 -34.96596 -33.66569 -31.12268 -29.81021 -27.87847 -26.98866 -24.04225 -22.73580 -22.02568 -19.31032 -18.68899 -17.76028 -17.33991 -16.74334 -16.45687 -15.92601 -15.83499 -14.96878 -14.71732 -14.28925 -13.86978 -13.18098 -13.06985 -12.85982 -12.70031 -12.47621 -12.13789 -11.99552 -11.81399 -11.09061 -10.65757 -10.15090 -9.42497 -8.36766 -8.22213 -6.31895 0.12107 0.69355 1.41660 1.42141 1.59025 2.19503 2.30863 2.31293 2.36537 2.87644 3.62243 3.65837 4.03361 4.21055 4.30508 4.41519 4.51399 4.58689 4.79643 4.91121 5.05415 5.16066 5.28571 5.45798 5.66396 5.79691 6.24523 6.44729 6.70970 6.93359 7.04672 7.86679 8.57737 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.070816 B = 0.006939 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.297532 B = 4033.935360 C = 4414.066740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.144 3.856 4 C -0.236 4.236 5 C 0.086 3.914 6 N -0.362 5.362 7 C -0.277 4.277 8 C 0.196 3.804 9 C -0.477 4.477 10 H 0.093 0.907 11 C 0.019 3.981 12 N -0.801 5.801 13 Si 0.996 3.004 14 H -0.249 1.249 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.531 5.531 18 C 0.213 3.787 19 C -0.190 4.190 20 H 0.120 0.880 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.192 0.808 24 H 0.195 0.805 25 H 0.180 0.820 26 H 0.276 0.724 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.665 -1.002 -0.007 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.093 3.907 4 C -0.259 4.259 5 C -0.040 4.040 6 N -0.037 5.037 7 C -0.404 4.404 8 C 0.072 3.928 9 C -0.510 4.510 10 H 0.111 0.889 11 C -0.197 4.197 12 N -0.426 5.426 13 Si 0.816 3.184 14 H -0.173 1.173 15 H -0.194 1.194 16 H -0.194 1.194 17 N -0.257 5.257 18 C -0.029 4.029 19 C -0.213 4.213 20 H 0.138 0.862 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.209 0.791 24 H 0.212 0.788 25 H 0.197 0.803 26 H 0.086 0.914 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.727 -1.819 -0.002 12.856 hybrid contribution 0.111 0.795 0.005 0.802 sum -12.616 -1.024 0.003 12.658 Atomic orbital electron populations 1.23438 0.75798 1.05782 1.02759 1.85988 1.24039 1.25688 1.88709 1.18411 0.90541 0.85504 0.96233 1.21033 1.02173 0.89198 1.13470 1.22105 0.81040 1.01499 0.99337 1.42797 1.06300 1.08266 1.46298 1.22751 0.89013 0.91371 1.37235 1.19063 0.92821 0.88325 0.92617 1.19139 0.89316 0.94274 1.48319 0.88894 1.26985 1.04471 0.96082 0.92188 1.70279 1.27401 1.10484 1.34455 0.84978 0.75793 0.79209 0.78466 1.17254 1.19405 1.19409 1.71625 1.12507 1.14140 1.27457 1.21448 0.88066 0.88172 1.05251 1.18976 0.92819 0.93778 1.15748 0.86183 0.91152 0.91143 0.79063 0.78837 0.80326 0.91450 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.82 113.37 1.11 1.37 15 2 O -0.33 -9.74 10.48 -89.73 -0.94 -10.68 15 3 C 0.14 5.06 6.68 22.61 0.15 5.21 15 4 C -0.24 -6.64 8.97 22.15 0.20 -6.44 15 5 C 0.09 2.84 10.92 83.11 0.91 3.75 15 6 N -0.36 -16.84 2.94 -348.65 -1.02 -17.87 15 7 C -0.28 -14.17 11.80 84.27 0.99 -13.18 15 8 C 0.20 11.86 6.66 39.71 0.26 12.13 15 9 C -0.48 -27.98 9.37 23.36 0.22 -27.76 15 10 H 0.09 4.99 7.84 -2.91 -0.02 4.97 15 11 C 0.02 1.08 5.49 85.16 0.47 1.55 15 12 N -0.80 -48.34 11.93 21.78 0.26 -48.08 15 13 Si 1.00 41.43 29.56 68.60 2.03 43.46 15 14 H -0.25 -9.71 7.11 99.48 0.71 -9.00 15 15 H -0.27 -10.79 7.11 99.48 0.71 -10.09 15 16 H -0.27 -10.80 7.11 99.48 0.71 -10.09 15 17 N -0.53 -33.29 9.53 -186.71 -1.78 -35.07 15 18 C 0.21 11.41 7.76 133.93 1.04 12.45 15 19 C -0.19 -8.67 10.04 22.53 0.23 -8.45 15 20 H 0.12 1.36 8.14 -2.39 -0.02 1.34 15 21 H 0.07 0.92 7.67 -2.38 -0.02 0.91 15 22 H 0.07 0.93 7.68 -2.39 -0.02 0.91 15 23 H 0.19 3.26 6.37 -2.92 -0.02 3.25 15 24 H 0.19 4.43 8.06 -2.91 -0.02 4.41 15 25 H 0.18 7.83 8.06 -2.91 -0.02 7.80 15 26 H 0.28 15.09 8.30 -92.71 -0.77 14.32 15 27 H 0.13 5.88 8.06 -2.91 -0.02 5.86 15 Total: -1.00 -78.35 243.43 5.31 -73.04 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.18 Total: 14.58 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 5.58 Total: -19.37 kcal Atomic # 7 Polarization: -98.48 SS G_CDS: -2.54 Total: -101.02 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.94 Total: -10.68 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -78.35 5.31 -73.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259737952.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.279 kcal (2) G-P(sol) polarization free energy of solvation -78.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds