Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36801 * 120.00394 * 2 1 4 4 H 1.07995 * 120.00572 * 203.12529 * 3 2 1 5 5 C 1.38767 * 119.99877 * 23.12791 * 3 2 1 6 6 N 1.31613 * 119.99621 * 12.86015 * 5 3 2 7 7 Si 1.86790 * 120.00129 * 192.86273 * 5 3 2 8 8 H 1.48506 * 109.47110 * 59.99797 * 7 5 3 9 9 H 1.48506 * 109.47473 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47067 * 299.99849 * 7 5 3 11 11 C 1.39054 * 119.99658 * 180.02562 * 2 1 3 12 12 C 1.38684 * 120.22829 * 90.00279 * 11 2 1 13 13 C 1.38449 * 120.31130 * 179.97438 * 12 11 2 14 14 C 1.38079 * 120.57759 * 359.97438 * 13 12 11 15 15 C 1.38739 * 120.06485 * 0.03203 * 14 13 12 16 16 O 1.35126 * 133.89006 * 179.97438 * 15 14 13 17 17 C 1.34265 * 108.13977 * 179.97438 * 16 15 14 18 18 N 1.29940 * 110.24236 * 359.97438 * 17 16 15 19 19 C 1.35917 * 108.80250 * 0.02562 * 18 17 16 20 20 H 1.08991 * 109.46659 * 275.11589 * 1 2 3 21 21 H 1.08997 * 109.46637 * 35.11513 * 1 2 3 22 22 H 1.09000 * 109.47025 * 155.11133 * 1 2 3 23 23 H 0.96999 * 119.99486 * 180.02562 * 6 5 3 24 24 H 1.07998 * 119.84432 * 359.69451 * 12 11 2 25 25 H 1.07994 * 119.71499 * 179.97438 * 13 12 11 26 26 H 1.07995 * 119.96822 * 179.97438 * 14 13 12 27 27 H 1.08000 * 124.88288 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1847 0.0000 4 1 3.1640 1.2223 -0.3673 5 6 1.5390 2.3382 0.4720 6 7 0.4122 2.2574 1.1474 7 14 2.3167 4.0054 0.1489 8 1 2.4202 4.2279 -1.3158 9 1 1.4751 5.0697 0.7525 10 1 3.6730 4.0443 0.7524 11 6 2.1602 -1.2043 -0.0005 12 6 2.5093 -1.8084 -1.1991 13 6 3.2020 -3.0072 -1.2016 14 6 3.5549 -3.6170 -0.0141 15 6 3.2155 -3.0301 1.1963 16 8 3.4115 -3.3694 2.4895 17 6 2.8616 -2.4169 3.2596 18 7 2.3283 -1.4921 2.5187 19 6 2.5149 -1.8159 1.2119 20 1 -0.3632 0.0916 1.0235 21 1 -0.3632 0.8406 -0.5911 22 1 -0.3633 -0.9322 -0.4325 23 1 -0.0144 3.0637 1.4770 24 1 2.2357 -1.3438 -2.1348 25 1 3.4686 -3.4694 -2.1405 26 1 4.0948 -4.5522 -0.0276 27 1 2.8630 -2.4186 4.3396 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746773.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 47.530364 kcal Electronic energy + Delta-G solvation = -14323.457700 eV Core-core repulsion = 11855.081046 eV Total energy + Delta-G solvation = -2468.376654 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.98953 -39.36249 -36.88683 -35.45791 -33.39247 -30.76789 -30.00185 -28.01344 -25.46440 -24.14036 -23.71632 -21.76814 -19.18160 -18.75480 -18.12285 -17.47930 -17.11514 -16.51463 -15.64859 -15.31687 -15.16065 -14.58391 -13.98119 -13.40026 -13.16577 -12.90388 -12.78984 -12.64534 -12.43961 -12.34774 -12.18204 -12.01141 -11.23230 -10.74545 -9.61981 -9.13734 -8.99923 -7.89557 -5.44317 -0.07237 0.39009 1.42694 1.46141 1.53131 1.70127 1.80916 2.45193 2.82485 3.24871 3.33613 3.42255 3.99330 4.17725 4.36763 4.41633 4.53858 4.69336 4.99686 5.12645 5.18636 5.33072 5.47083 5.52811 5.58253 5.75793 5.89915 6.30473 6.85314 7.06392 7.82060 8.21154 9.14151 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.009995 C = 0.009053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.881963 B = 2800.802732 C = 3092.213386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.573 5.573 3 C -0.270 4.270 4 H 0.064 0.936 5 C -0.043 4.043 6 N -0.930 5.930 7 Si 0.977 3.023 8 H -0.270 1.270 9 H -0.288 1.288 10 H -0.280 1.280 11 C 0.218 3.782 12 C -0.151 4.151 13 C -0.066 4.066 14 C -0.113 4.113 15 C -0.004 4.004 16 O -0.224 6.224 17 C 0.218 3.782 18 N -0.515 5.515 19 C -0.035 4.035 20 H 0.004 0.996 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.251 0.749 24 H 0.137 0.863 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -12.052 -1.728 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.292 5.292 3 C -0.399 4.399 4 H 0.082 0.918 5 C -0.239 4.239 6 N -0.574 5.574 7 Si 0.803 3.197 8 H -0.195 1.195 9 H -0.214 1.214 10 H -0.206 1.206 11 C 0.123 3.877 12 C -0.173 4.173 13 C -0.084 4.084 14 C -0.132 4.132 15 C -0.055 4.055 16 O -0.116 6.116 17 C -0.013 4.013 18 N -0.243 5.243 19 C -0.148 4.148 20 H 0.022 0.978 21 H 0.049 0.951 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.155 0.845 25 H 0.201 0.799 26 H 0.186 0.814 27 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges 5.403 -11.335 -1.467 12.643 hybrid contribution 0.258 0.810 0.332 0.912 sum 5.661 -10.526 -1.135 12.005 Atomic orbital electron populations 1.20529 0.81315 0.96083 0.97865 1.41355 1.02239 0.99941 1.85638 1.19250 0.98672 0.85621 1.36338 0.91793 1.25884 0.98468 1.02169 0.97353 1.70267 1.20495 1.27975 1.38685 0.85222 0.77435 0.78718 0.78278 1.19528 1.21421 1.20595 1.17674 0.92821 0.87390 0.89803 1.21776 1.01192 0.97356 0.96939 1.21320 0.95298 0.93228 0.98571 1.20234 1.04371 1.02463 0.86123 1.20818 1.02818 0.96570 0.85278 1.84471 1.65604 1.46476 1.15045 1.29327 0.90284 0.81097 1.00553 1.70614 1.22496 1.28343 1.02802 1.21250 1.04402 0.96262 0.92911 0.97801 0.95139 0.95635 0.93983 0.84509 0.79875 0.81435 0.68512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.05 8.96 127.77 1.15 11.19 15 2 N -0.57 -31.61 2.93 -534.61 -1.57 -33.17 15 3 C -0.27 -15.94 9.63 84.04 0.81 -15.13 15 4 H 0.06 3.72 7.86 -2.91 -0.02 3.70 15 5 C -0.04 -2.50 5.10 84.85 0.43 -2.07 15 6 N -0.93 -57.53 10.70 21.64 0.23 -57.30 15 7 Si 0.98 46.69 29.57 68.60 2.03 48.72 15 8 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 15 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 15 11 C 0.22 10.37 5.03 38.62 0.19 10.56 15 12 C -0.15 -5.55 9.95 22.43 0.22 -5.33 15 13 C -0.07 -1.76 10.02 22.28 0.22 -1.53 15 14 C -0.11 -3.14 10.06 22.35 0.22 -2.92 15 15 C 0.00 -0.14 7.43 22.87 0.17 0.03 15 16 O -0.22 -7.30 10.78 -10.42 -0.11 -7.42 15 17 C 0.22 7.06 13.13 130.52 1.71 8.78 15 18 N -0.51 -23.77 11.33 -307.92 -3.49 -27.26 15 19 C -0.04 -1.61 7.17 39.50 0.28 -1.33 15 20 H 0.00 0.22 7.33 -2.39 -0.02 0.20 15 21 H 0.03 1.69 7.34 -2.39 -0.02 1.67 15 22 H 0.03 1.19 8.01 -2.39 -0.02 1.18 15 23 H 0.25 14.95 8.31 -92.71 -0.77 14.18 15 24 H 0.14 4.72 8.06 -2.91 -0.02 4.70 15 25 H 0.18 2.98 8.06 -2.91 -0.02 2.95 15 26 H 0.17 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.30 5.48 8.06 -2.91 -0.02 5.46 15 Total: -1.00 -77.56 244.19 3.69 -73.87 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 1.18 Total: 0.31 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.42 Total: 2.25 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -4.82 Total: -117.73 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.11 Total: -7.42 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.56 3.69 -73.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746773.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.401 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds