Wall clock time and date at job start Mon Mar 30 2020 02:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36813 * 120.00354 * 2 1 4 4 H 1.07999 * 120.00253 * 145.32650 * 3 2 1 5 5 C 1.38783 * 119.99617 * 325.33368 * 3 2 1 6 6 N 1.31603 * 119.99810 * 157.41957 * 5 3 2 7 7 Si 1.86796 * 120.00079 * 337.41471 * 5 3 2 8 8 H 1.48496 * 109.47046 * 95.40667 * 7 5 3 9 9 H 1.48501 * 109.47080 * 215.40635 * 7 5 3 10 10 H 1.48503 * 109.47176 * 335.40876 * 7 5 3 11 11 C 1.39295 * 119.99958 * 179.97438 * 2 1 3 12 12 C 1.38817 * 120.15151 * 90.00159 * 11 2 1 13 13 C 1.38507 * 120.36702 * 179.97438 * 12 11 2 14 14 C 1.37802 * 120.51795 * 0.02562 * 13 12 11 15 15 C 1.39718 * 119.90702 * 359.97438 * 14 13 12 16 16 N 1.36063 * 133.74227 * 180.02562 * 15 14 13 17 17 C 1.29917 * 108.80199 * 179.97438 * 16 15 14 18 18 O 1.34203 * 110.24750 * 359.97438 * 17 16 15 19 19 C 1.35110 * 108.14952 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47356 * 270.42338 * 1 2 3 21 21 H 1.09007 * 109.47124 * 30.42438 * 1 2 3 22 22 H 1.08993 * 109.47539 * 150.42125 * 1 2 3 23 23 H 0.96997 * 120.00152 * 179.97438 * 6 5 3 24 24 H 1.08000 * 119.80881 * 359.69778 * 12 11 2 25 25 H 1.07999 * 119.74157 * 179.97438 * 13 12 11 26 26 H 1.07993 * 120.04352 * 180.02562 * 14 13 12 27 27 H 1.08000 * 124.88194 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1848 0.0000 4 1 3.0852 1.2678 0.5321 5 6 1.6400 2.2800 -0.6837 6 7 2.0135 3.4966 -0.3486 7 14 0.4246 2.0272 -2.0795 8 1 -0.9601 2.1654 -1.5612 9 1 0.6626 3.0458 -3.1336 10 1 0.6052 0.6695 -2.6533 11 6 2.1614 -1.2063 0.0005 12 6 2.5101 -1.8107 -1.1995 13 6 3.2031 -3.0099 -1.2042 14 6 3.5552 -3.6193 -0.0195 15 6 3.2126 -3.0255 1.1980 16 7 3.4107 -3.3673 2.5000 17 6 2.8835 -2.4531 3.2578 18 8 2.3278 -1.4903 2.5058 19 6 2.5134 -1.8112 1.2066 20 1 -0.3634 0.0076 1.0276 21 1 -0.3634 0.8862 -0.5204 22 1 -0.3634 -0.8937 -0.5072 23 1 1.6580 4.2621 -0.8266 24 1 2.2355 -1.3454 -2.1347 25 1 3.4688 -3.4715 -2.1437 26 1 4.0958 -4.5541 -0.0320 27 1 2.8911 -2.4660 4.3376 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259753702.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:17 Heat of formation + Delta-G solvation = 75.312354 kcal Electronic energy + Delta-G solvation = -14361.289404 eV Core-core repulsion = 11894.117467 eV Total energy + Delta-G solvation = -2467.171936 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.69793 -37.93820 -35.73021 -33.82583 -31.79182 -29.41691 -29.04658 -26.15270 -24.11024 -22.73677 -22.45874 -20.20849 -17.59616 -17.30251 -16.61173 -16.06576 -15.83473 -15.21280 -14.39522 -14.01944 -13.30550 -12.83876 -12.63741 -12.43730 -11.91255 -11.78998 -11.66808 -11.17715 -10.82082 -10.62071 -10.23677 -10.12573 -9.72319 -8.72168 -8.28059 -7.80295 -7.25908 -6.14947 -3.60258 1.18342 1.75212 2.87970 3.13644 3.20815 3.36339 3.39831 4.12940 4.29685 4.36508 4.63983 5.13074 5.20708 5.40577 5.57450 5.73310 5.86887 6.07046 6.17772 6.31670 6.51126 6.55490 6.59984 6.79750 7.02830 7.05154 7.83895 7.98342 8.29622 8.81394 9.52290 9.85397 10.99337 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038760 B = 0.010490 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.229136 B = 2668.441923 C = 3033.816679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.573 5.573 3 C -0.276 4.276 4 H 0.083 0.917 5 C 0.041 3.959 6 N -0.890 5.890 7 Si 0.887 3.113 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.237 3.763 12 C -0.117 4.117 13 C -0.110 4.110 14 C -0.093 4.093 15 C 0.016 3.984 16 N -0.495 5.495 17 C 0.212 3.788 18 O -0.202 6.202 19 C 0.003 3.997 20 H 0.025 0.975 21 H 0.051 0.949 22 H 0.037 0.963 23 H 0.267 0.733 24 H 0.135 0.865 25 H 0.129 0.871 26 H 0.126 0.874 27 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -11.529 1.152 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.292 5.292 3 C -0.403 4.403 4 H 0.100 0.900 5 C -0.161 4.161 6 N -0.529 5.529 7 Si 0.717 3.283 8 H -0.211 1.211 9 H -0.226 1.226 10 H -0.193 1.193 11 C 0.141 3.859 12 C -0.138 4.138 13 C -0.130 4.130 14 C -0.112 4.112 15 C -0.096 4.096 16 N -0.226 5.226 17 C -0.020 4.020 18 O -0.091 6.091 19 C -0.050 4.050 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.153 0.847 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.365 -11.784 1.323 11.864 hybrid contribution -0.919 0.670 -0.759 1.367 sum -1.284 -11.114 0.564 11.203 Atomic orbital electron populations 1.21487 0.83081 0.99429 0.99196 1.41509 1.01148 1.00455 1.86088 1.18685 1.07996 0.85119 1.28463 0.89988 1.25361 0.98201 0.94950 0.97585 1.69849 1.45390 0.97638 1.40047 0.86830 0.80443 0.77834 0.83188 1.21144 1.22631 1.19334 1.16527 0.94706 0.87776 0.86916 1.21599 0.99467 0.95069 0.97647 1.20883 0.99139 0.95666 0.97329 1.20085 1.02088 1.00352 0.88697 1.19798 1.02773 0.94954 0.92054 1.70549 1.22774 1.28132 1.01096 1.28127 0.91844 0.82562 0.99420 1.84626 1.63685 1.44850 1.15904 1.21650 1.02601 0.96996 0.83737 0.95695 0.93082 0.94466 0.92277 0.84745 0.85275 0.85610 0.73705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 9.54 59.84 0.57 3.04 15 2 N -0.57 -14.13 2.54 -120.49 -0.31 -14.44 15 3 C -0.28 -7.84 9.92 -15.13 -0.15 -7.99 15 4 H 0.08 2.56 8.06 -52.49 -0.42 2.14 15 5 C 0.04 1.17 5.32 -17.45 -0.09 1.07 15 6 N -0.89 -26.75 13.97 55.49 0.78 -25.97 15 7 Si 0.89 21.59 24.92 -169.99 -4.24 17.36 15 8 H -0.28 -6.68 6.67 56.52 0.38 -6.30 15 9 H -0.30 -7.33 7.11 56.52 0.40 -6.93 15 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 11 C 0.24 5.21 5.04 -83.81 -0.42 4.79 15 12 C -0.12 -2.21 9.96 -39.27 -0.39 -2.60 15 13 C -0.11 -1.71 10.01 -39.64 -0.40 -2.11 15 14 C -0.09 -1.51 10.10 -39.19 -0.40 -1.90 15 15 C 0.02 0.30 7.24 -84.73 -0.61 -0.31 15 16 N -0.50 -8.68 11.34 -12.56 -0.14 -8.82 15 17 C 0.21 3.24 13.13 51.95 0.68 3.92 15 18 O -0.20 -4.01 10.77 3.71 0.04 -3.97 15 19 C 0.00 0.07 7.36 -38.43 -0.28 -0.21 15 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.05 1.18 2.87 -51.92 -0.15 1.04 15 22 H 0.04 0.72 8.04 -51.93 -0.42 0.30 15 23 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 24 H 0.13 2.48 8.06 -52.49 -0.42 2.06 15 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 26 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.25 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 239.68 15.07 3.61 3.61 Total: -1.00 -32.65 239.68 -4.01 -36.66 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -2.26 Total: -2.12 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.49 Total: -2.30 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.33 Total: -49.24 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.04 Total: -3.97 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.24 Total: 17.36 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.65 -4.01 -36.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259753702.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.973 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds