Wall clock time and date at job start Mon Mar 30 2020 02:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.29955 * 124.84702 * 90.02281 * 11 10 9 13 13 C 1.35897 * 108.79718 * 179.97438 * 12 11 10 14 14 C 1.39349 * 134.73436 * 180.02562 * 13 12 11 15 15 N 1.31696 * 120.23581 * 179.97438 * 14 13 12 16 16 C 1.32209 * 122.26844 * 359.97008 * 15 14 13 17 17 C 1.37895 * 121.28200 * 0.02562 * 16 15 14 18 18 C 1.38895 * 118.85569 * 0.02562 * 17 16 15 19 19 O 1.34344 * 124.84636 * 269.72246 * 11 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.08002 * 119.88377 * 359.95269 * 14 13 12 26 26 H 1.08007 * 119.35694 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.56879 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1203 -5.6108 -1.0650 13 6 0.4678 -6.7419 -0.6888 14 6 -0.1396 -7.7959 -1.3684 15 7 -0.7059 -8.7783 -0.6986 16 6 -0.7250 -8.8124 0.6229 17 6 -0.1472 -7.8103 1.3735 18 6 0.4634 -6.7489 0.7179 19 8 1.1128 -5.6343 1.1040 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 -0.1464 -7.8070 -2.4484 26 1 -1.2024 -9.6414 1.1244 27 1 -0.1691 -7.8500 2.4526 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807573.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:03 Heat of formation + Delta-G solvation = 34.949496 kcal Electronic energy + Delta-G solvation = -13541.864863 eV Core-core repulsion = 11072.942662 eV Total energy + Delta-G solvation = -2468.922201 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.22428 -39.10344 -34.93708 -33.98799 -32.07179 -31.46705 -29.45793 -26.07098 -23.84326 -23.12062 -22.02295 -20.70461 -18.33004 -17.44614 -16.77051 -16.32232 -15.93756 -14.57108 -14.52198 -14.19625 -13.60121 -13.49248 -13.19738 -12.41808 -12.12265 -11.70019 -11.23682 -11.05320 -10.70521 -10.44161 -10.21233 -9.91959 -9.83324 -9.44811 -9.32264 -8.49027 -8.41330 -6.12826 -4.17824 0.59376 1.16036 2.54521 2.60111 3.25584 3.33303 3.36721 3.72160 3.96818 4.31913 4.36470 4.46007 4.84492 5.06433 5.23826 5.24111 5.48965 5.79267 5.92831 6.09710 6.12327 6.23645 6.37821 6.60330 7.44466 7.49666 7.70734 7.82601 7.89760 8.17552 8.87611 9.47313 10.98461 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.071732 B = 0.005467 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.250784 B = 5120.479937 C = 5140.666244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.032 4.032 11 C 0.290 3.710 12 N -0.484 5.484 13 C -0.021 4.021 14 C 0.167 3.833 15 N -0.480 5.480 16 C 0.093 3.907 17 C -0.138 4.138 18 C 0.029 3.971 19 O -0.207 6.207 20 H 0.263 0.737 21 H 0.023 0.977 22 H 0.028 0.972 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.169 0.831 26 H 0.169 0.831 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -13.659 2.002 13.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.070 4.070 11 C 0.080 3.920 12 N -0.213 5.213 13 C -0.135 4.135 14 C 0.002 3.998 15 N -0.191 5.191 16 C -0.057 4.057 17 C -0.159 4.159 18 C -0.029 4.029 19 O -0.098 6.098 20 H 0.072 0.928 21 H 0.041 0.959 22 H 0.047 0.953 23 H 0.122 0.878 24 H 0.107 0.893 25 H 0.186 0.814 26 H 0.186 0.814 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.438 -14.054 0.999 14.097 hybrid contribution 0.571 1.454 1.254 2.004 sum 1.010 -12.600 2.253 12.839 Atomic orbital electron populations 1.69977 1.06175 1.26916 1.49849 1.25022 0.94888 0.99502 0.94875 0.86439 0.80040 0.83271 0.77681 1.19544 1.20876 1.20922 1.21103 0.93207 0.90164 1.51970 0.91949 1.19180 0.93584 0.89803 0.98532 1.20876 0.98062 0.83662 1.04437 1.27737 0.92328 0.94947 0.76991 1.70729 1.16627 1.05111 1.28795 1.21175 1.03056 0.97040 0.92229 1.22131 0.90964 0.86188 1.00520 1.67743 1.17041 1.24639 1.09636 1.22526 0.96776 0.97195 0.89245 1.20941 1.00918 0.92154 1.01886 1.20549 0.98068 0.89317 0.94967 1.84544 1.58696 1.29267 1.37273 0.92758 0.95912 0.95330 0.87756 0.89265 0.81367 0.81352 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 15 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 9 C 0.03 0.67 4.95 -27.88 -0.14 0.53 15 10 C -0.03 -0.63 5.78 -27.89 -0.16 -0.79 15 11 C 0.29 5.65 7.49 -13.07 -0.10 5.55 15 12 N -0.48 -9.50 11.33 -8.67 -0.10 -9.59 15 13 C -0.02 -0.36 7.29 -84.73 -0.62 -0.98 15 14 C 0.17 2.44 11.26 -17.20 -0.19 2.25 15 15 N -0.48 -6.55 10.33 -13.00 -0.13 -6.69 15 16 C 0.09 1.07 11.16 -17.51 -0.20 0.88 15 17 C -0.14 -1.76 10.13 -39.46 -0.40 -2.16 15 18 C 0.03 0.49 7.51 -38.42 -0.29 0.21 15 19 O -0.21 -3.86 10.76 4.64 0.05 -3.81 15 20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.10 1.92 8.14 -51.93 -0.42 1.49 15 24 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 25 H 0.17 2.04 8.06 -52.49 -0.42 1.62 15 26 H 0.17 1.26 8.06 -52.48 -0.42 0.84 15 27 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 LS Contribution 249.50 15.07 3.76 3.76 Total: -1.00 -30.87 249.50 -5.71 -36.58 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -2.50 Total: -3.29 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.50 Total: -7.40 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.50 Total: -41.71 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.05 Total: -3.81 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.87 -5.71 -36.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807573.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.531 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds