Wall clock time and date at job start Mon Mar 30 2020 02:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 N 1.29955 * 124.84702 * 90.02281 * 11 10 9 13 13 C 1.35897 * 108.79718 * 179.97438 * 12 11 10 14 14 C 1.39349 * 134.73436 * 180.02562 * 13 12 11 15 15 N 1.31696 * 120.23581 * 179.97438 * 14 13 12 16 16 C 1.32209 * 122.26844 * 359.97008 * 15 14 13 17 17 C 1.37895 * 121.28200 * 0.02562 * 16 15 14 18 18 C 1.38895 * 118.85569 * 0.02562 * 17 16 15 19 19 O 1.34344 * 124.84636 * 269.72246 * 11 10 9 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 22 22 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 23 23 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 24 24 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 25 25 H 1.08002 * 119.88377 * 359.95269 * 14 13 12 26 26 H 1.08007 * 119.35694 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.56879 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 7 1.1203 -5.6108 -1.0650 13 6 0.4678 -6.7419 -0.6888 14 6 -0.1396 -7.7959 -1.3684 15 7 -0.7059 -8.7783 -0.6986 16 6 -0.7250 -8.8124 0.6229 17 6 -0.1472 -7.8103 1.3735 18 6 0.4634 -6.7489 0.7179 19 8 1.1128 -5.6343 1.1040 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5567 0.8903 22 1 0.6246 -2.5571 -0.8897 23 1 2.8718 -3.6044 -0.8895 24 1 2.8718 -3.6044 0.8904 25 1 -0.1464 -7.8070 -2.4484 26 1 -1.2024 -9.6414 1.1244 27 1 -0.1691 -7.8500 2.4526 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807573.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:02 Heat of formation + Delta-G solvation = 12.672324 kcal Electronic energy + Delta-G solvation = -13542.830874 eV Core-core repulsion = 11072.942662 eV Total energy + Delta-G solvation = -2469.888212 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.53648 -40.22868 -36.47869 -35.70027 -33.78239 -32.69520 -30.86460 -27.87314 -25.14105 -24.54130 -23.49232 -22.29491 -19.54748 -18.89392 -18.41279 -17.93364 -17.06802 -16.50453 -15.58689 -15.49068 -15.16577 -14.78127 -14.64877 -14.25438 -13.45083 -13.31204 -12.88165 -12.83986 -12.44980 -12.04682 -11.81691 -11.77396 -11.35288 -10.93560 -10.64942 -10.60944 -9.65489 -8.23484 -6.36163 -0.57397 -0.02434 1.19875 1.30201 1.43824 1.44527 1.57836 2.40314 2.59934 2.67622 3.11682 3.20684 3.37879 3.68537 3.98576 4.13710 4.39189 4.41796 4.49012 4.72545 4.77669 4.89707 5.03118 5.31639 5.38602 5.48168 5.74021 6.09416 6.38306 6.75028 6.79531 7.34239 8.89273 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.071732 B = 0.005467 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.250784 B = 5120.479937 C = 5140.666244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.017 4.017 11 C 0.269 3.731 12 N -0.499 5.499 13 C -0.057 4.057 14 C 0.169 3.831 15 N -0.485 5.485 16 C 0.111 3.889 17 C -0.136 4.136 18 C 0.009 3.991 19 O -0.218 6.218 20 H 0.264 0.736 21 H -0.006 1.006 22 H -0.006 1.006 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.186 0.814 26 H 0.219 0.781 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.407 -14.935 2.693 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.004 4.004 10 C -0.055 4.055 11 C 0.059 3.941 12 N -0.229 5.229 13 C -0.171 4.171 14 C 0.004 3.996 15 N -0.196 5.196 16 C -0.039 4.039 17 C -0.156 4.156 18 C -0.048 4.048 19 O -0.109 6.109 20 H 0.073 0.927 21 H 0.013 0.987 22 H 0.012 0.988 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.203 0.797 26 H 0.235 0.765 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.978 -15.361 1.688 15.484 hybrid contribution 0.287 1.646 1.058 1.978 sum 1.265 -13.714 2.745 14.043 Atomic orbital electron populations 1.70125 1.08123 1.27967 1.51300 1.26039 0.95725 1.03720 0.94442 0.85285 0.79340 0.78183 0.77546 1.17767 1.20731 1.20574 1.21596 0.94162 0.90956 1.51039 0.90376 1.18949 0.93963 0.91998 0.95477 1.20561 0.96822 0.82068 1.06023 1.27451 0.93748 0.95455 0.77495 1.70618 1.16771 1.06141 1.29390 1.21506 1.04839 0.97538 0.93230 1.22469 0.90126 0.85461 1.01524 1.67880 1.16808 1.24002 1.10866 1.23402 0.94526 0.97458 0.88497 1.21474 0.99650 0.90718 1.03789 1.21198 0.98615 0.89703 0.95330 1.84486 1.59263 1.30105 1.37013 0.92685 0.98728 0.98762 0.86621 0.87223 0.79661 0.76469 0.80451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.29 21.45 0.28 -56.15 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 15 3 Si 0.97 42.88 29.54 68.60 2.03 44.90 15 4 H -0.25 -10.42 7.11 99.48 0.71 -9.72 15 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 6 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 7 C -0.54 -29.25 9.11 25.60 0.23 -29.02 15 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 15 9 C 0.03 1.77 4.95 29.85 0.15 1.92 15 10 C -0.02 -0.67 5.78 29.85 0.17 -0.50 15 11 C 0.27 10.77 7.49 88.39 0.66 11.43 15 12 N -0.50 -20.10 11.33 -296.09 -3.36 -23.46 15 13 C -0.06 -2.01 7.29 39.37 0.29 -1.72 15 14 C 0.17 4.74 11.26 84.98 0.96 5.70 15 15 N -0.49 -11.94 10.33 -195.05 -2.02 -13.96 15 16 C 0.11 2.14 11.16 84.55 0.94 3.08 15 17 C -0.14 -3.08 10.13 22.35 0.23 -2.86 15 18 C 0.01 0.30 7.51 23.02 0.17 0.47 15 19 O -0.22 -8.23 10.76 -6.33 -0.07 -8.29 15 20 H 0.26 14.96 8.31 -92.71 -0.77 14.18 15 21 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 23 H 0.12 4.27 8.14 -2.39 -0.02 4.25 15 24 H 0.11 3.84 8.14 -2.39 -0.02 3.83 15 25 H 0.19 4.33 8.06 -2.91 -0.02 4.31 15 26 H 0.22 1.99 8.06 -2.91 -0.02 1.97 15 27 H 0.18 2.76 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -68.61 249.50 2.32 -66.29 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: 1.18 Total: 1.76 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.26 Total: -11.10 kcal Atomic # 7 Polarization: -88.49 SS G_CDS: -5.09 Total: -93.57 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.07 Total: -8.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.61 2.32 -66.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807573.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.967 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds