Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34609 * 125.74688 * 2 1 4 4 C 1.38497 * 107.30403 * 180.26473 * 3 2 1 5 5 C 1.46900 * 126.45596 * 179.97438 * 4 3 2 6 6 O 1.34484 * 126.24225 * 354.41097 * 5 4 3 7 7 C 1.34326 * 110.99234 * 179.97438 * 6 5 4 8 8 C 1.34045 * 110.08619 * 359.97438 * 7 6 5 9 9 C 1.40726 * 126.23862 * 174.09130 * 5 4 3 10 10 C 1.40706 * 127.45263 * 359.97438 * 9 5 4 11 11 H 1.07993 * 120.00009 * 333.76719 * 10 9 5 12 12 C 1.39686 * 119.99801 * 153.76908 * 10 9 5 13 13 N 1.31072 * 119.99488 * 170.44534 * 12 10 9 14 14 Si 1.86801 * 120.00213 * 350.44330 * 12 10 9 15 15 H 1.48499 * 109.46954 * 87.08510 * 14 12 10 16 16 H 1.48491 * 109.47049 * 207.08673 * 14 12 10 17 17 H 1.48498 * 109.47000 * 327.09180 * 14 12 10 18 18 C 1.41499 * 107.08476 * 0.02562 * 4 3 2 19 19 N 1.30447 * 108.07695 * 359.97438 * 18 4 3 20 20 H 1.08994 * 109.47000 * 269.71394 * 1 2 3 21 21 H 1.09003 * 109.46956 * 29.71297 * 1 2 3 22 22 H 1.08997 * 109.46976 * 149.71044 * 1 2 3 23 23 H 1.08008 * 126.34639 * 0.26742 * 3 2 1 24 24 H 1.08003 * 124.95464 * 180.02562 * 7 6 5 25 25 H 1.08006 * 126.84744 * 180.02562 * 8 7 6 26 26 H 0.97005 * 119.99587 * 180.02562 * 13 12 10 27 27 H 1.08000 * 125.96110 * 179.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2514 1.0925 0.0000 4 6 3.5653 0.6544 -0.0061 5 6 4.7671 1.4991 -0.0089 6 8 4.7964 2.8397 -0.1116 7 6 6.0590 3.2972 -0.0805 8 6 6.9163 2.2743 0.0449 9 6 6.0974 1.0535 0.1018 10 6 6.5470 -0.2730 0.2365 11 1 5.9032 -1.0191 0.6781 12 6 7.8262 -0.6246 -0.2008 13 7 8.3170 -1.8045 0.0905 14 14 8.8373 0.5867 -1.2007 15 1 9.5975 1.4729 -0.2831 16 1 9.7851 -0.1574 -2.0684 17 1 7.9330 1.4077 -2.0452 18 6 3.5317 -0.7602 -0.0104 19 7 2.2824 -1.1355 -0.0065 20 1 -0.3633 -0.0051 1.0276 21 1 -0.3633 0.8926 -0.5094 22 1 -0.3633 -0.8874 -0.5183 23 1 1.9194 2.1202 0.0041 24 1 6.3420 4.3374 -0.1460 25 1 7.9934 2.3348 0.0976 26 1 9.2055 -2.0486 -0.2128 27 1 4.3906 -1.4150 -0.0159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259811010.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 65.068294 kcal Electronic energy + Delta-G solvation = -14008.844313 eV Core-core repulsion = 11541.228161 eV Total energy + Delta-G solvation = -2467.616152 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.43472 -41.62003 -35.79259 -34.24285 -33.21022 -31.91586 -29.73423 -27.76649 -26.55734 -22.82007 -22.54913 -21.21027 -20.44241 -19.34782 -18.01529 -17.06230 -16.48916 -16.13588 -15.98973 -15.62493 -15.22325 -14.54448 -13.85728 -13.77964 -13.46894 -13.40825 -13.32330 -12.85913 -12.40024 -12.00128 -11.69321 -11.59477 -11.14316 -10.34821 -10.22878 -10.02358 -8.71749 -8.43516 -6.19709 0.62848 1.13174 1.27838 1.44443 1.50520 1.75738 1.83764 2.21641 2.36265 2.64874 3.30164 3.71699 4.09630 4.29478 4.44021 4.47262 4.49772 4.71582 4.81813 4.83370 5.02954 5.18653 5.33677 5.68750 5.82894 5.92026 6.24077 6.31145 6.59723 6.78470 6.90985 7.03620 8.37082 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.009887 C = 0.008010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.339030 B = 2831.283037 C = 3494.784046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.370 5.370 3 C 0.042 3.958 4 C -0.139 4.139 5 C -0.120 4.120 6 O -0.194 6.194 7 C -0.014 4.014 8 C -0.306 4.306 9 C -0.008 4.008 10 C -0.456 4.456 11 H 0.065 0.935 12 C 0.039 3.961 13 N -0.871 5.871 14 Si 0.970 3.030 15 H -0.254 1.254 16 H -0.286 1.286 17 H -0.253 1.253 18 C 0.046 3.954 19 N -0.330 5.330 20 H 0.088 0.912 21 H 0.118 0.882 22 H 0.092 0.908 23 H 0.209 0.791 24 H 0.239 0.761 25 H 0.138 0.862 26 H 0.288 0.712 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.669 9.004 -1.899 13.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.152 5.152 3 C -0.106 4.106 4 C -0.150 4.150 5 C -0.169 4.169 6 O -0.093 6.093 7 C -0.082 4.082 8 C -0.326 4.326 9 C -0.011 4.011 10 C -0.487 4.487 11 H 0.082 0.918 12 C -0.171 4.171 13 N -0.501 5.501 14 Si 0.794 3.206 15 H -0.179 1.179 16 H -0.213 1.213 17 H -0.177 1.177 18 C -0.138 4.138 19 N -0.153 5.153 20 H 0.106 0.894 21 H 0.136 0.864 22 H 0.111 0.889 23 H 0.225 0.775 24 H 0.255 0.745 25 H 0.156 0.844 26 H 0.098 0.902 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.755 7.938 -1.911 13.503 hybrid contribution 1.644 0.398 -0.112 1.696 sum -9.110 8.336 -2.023 12.513 Atomic orbital electron populations 1.22243 0.71338 1.06136 1.04762 1.48508 1.08006 1.02861 1.55868 1.23202 0.89271 0.94240 1.03839 1.18091 0.90141 0.91388 1.15396 1.19594 0.92805 0.79691 1.24764 1.83542 1.29742 1.21600 1.74418 1.24142 0.80373 0.99974 1.03692 1.22928 0.99942 0.93671 1.16021 1.19513 0.90898 0.93333 0.97350 1.18633 0.99645 0.93693 1.36735 0.91751 1.26696 0.98027 0.97285 0.95113 1.69793 1.18099 1.22449 1.39780 0.85527 0.77615 0.78327 0.79084 1.17937 1.21317 1.17703 1.24089 0.94635 0.94765 1.00317 1.76912 1.01840 1.09688 1.26899 0.89377 0.86368 0.88936 0.77476 0.74538 0.84425 0.90242 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.75 11.45 127.77 1.46 3.21 15 2 N -0.37 -12.10 3.99 -367.09 -1.46 -13.56 15 3 C 0.04 1.47 11.54 84.33 0.97 2.44 15 4 C -0.14 -6.30 6.12 -20.14 -0.12 -6.42 15 5 C -0.12 -5.86 7.33 25.15 0.18 -5.68 15 6 O -0.19 -8.27 10.56 -4.47 -0.05 -8.32 15 7 C -0.01 -0.54 11.96 66.86 0.80 0.26 15 8 C -0.31 -13.88 8.21 23.65 0.19 -13.68 15 9 C -0.01 -0.40 5.55 -19.74 -0.11 -0.51 15 10 C -0.46 -26.39 8.93 23.22 0.21 -26.18 15 11 H 0.06 3.98 5.74 -2.91 -0.02 3.96 15 12 C 0.04 2.19 5.51 85.16 0.47 2.66 15 13 N -0.87 -49.87 13.94 21.79 0.30 -49.57 15 14 Si 0.97 43.76 24.58 68.60 1.69 45.45 15 15 H -0.25 -10.56 6.57 99.48 0.65 -9.91 15 16 H -0.29 -12.35 7.11 99.48 0.71 -11.64 15 17 H -0.25 -11.49 6.62 99.48 0.66 -10.83 15 18 C 0.05 2.15 11.13 85.70 0.95 3.10 15 19 N -0.33 -13.77 12.49 -56.13 -0.70 -14.47 15 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.12 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.21 5.41 8.06 -2.91 -0.02 5.39 15 24 H 0.24 5.89 8.06 -2.91 -0.02 5.87 15 25 H 0.14 5.92 4.79 -2.91 -0.01 5.91 15 26 H 0.29 14.95 8.30 -92.70 -0.77 14.18 15 27 H 0.17 8.83 5.60 -2.91 -0.02 8.82 15 Total: -1.00 -71.14 238.54 5.89 -65.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 1.10 Total: 16.01 kcal Atomic # 6 Polarization: -45.80 SS G_CDS: 5.01 Total: -40.79 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -1.86 Total: -77.60 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.05 Total: -8.32 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.69 Total: 45.45 kcal Total: -71.14 5.89 -65.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259811010.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.320 kcal (2) G-P(sol) polarization free energy of solvation -71.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds