Wall clock time and date at job start Mon Mar 30 2020 02:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32078 * 125.92187 * 2 1 4 4 C 1.33435 * 110.05121 * 179.73803 * 3 2 1 5 5 C 1.40173 * 131.70949 * 180.02562 * 4 3 2 6 6 C 1.37841 * 119.46853 * 179.97438 * 5 4 3 7 7 C 1.39634 * 119.64104 * 0.04262 * 6 5 4 8 8 C 1.36402 * 120.05379 * 359.97438 * 7 6 5 9 9 O 1.35269 * 119.72488 * 180.02562 * 8 7 6 10 10 N 1.36424 * 120.55872 * 0.02562 * 8 7 6 11 11 C 1.38650 * 132.42924 * 180.02562 * 10 8 7 12 12 C 1.39832 * 126.89674 * 359.97438 * 11 10 8 13 13 H 1.08003 * 119.99932 * 37.73059 * 12 11 10 14 14 C 1.39780 * 120.00102 * 217.73786 * 12 11 10 15 15 N 1.31096 * 120.00271 * 18.88849 * 14 12 11 16 16 Si 1.86802 * 120.00121 * 198.89237 * 14 12 11 17 17 H 1.48506 * 109.47038 * 59.99780 * 16 14 12 18 18 H 1.48502 * 109.47104 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47140 * 299.99893 * 16 14 12 20 20 H 1.08992 * 109.47159 * 91.39346 * 1 2 3 21 21 H 1.09002 * 109.46884 * 211.39450 * 1 2 3 22 22 H 1.08997 * 109.46604 * 331.38892 * 1 2 3 23 23 H 1.07998 * 120.26334 * 359.95984 * 5 4 3 24 24 H 1.08006 * 120.17981 * 180.02562 * 6 5 4 25 25 H 1.08000 * 119.97658 * 179.97438 * 7 6 5 26 26 H 0.96697 * 114.00074 * 269.98050 * 9 8 7 27 27 H 0.96996 * 120.00097 * 174.60305 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0696 0.0000 4 6 3.5654 0.7047 0.0057 5 6 4.7486 1.4562 0.0086 6 6 5.9644 0.8067 0.0152 7 6 6.0017 -0.5891 0.0181 8 6 4.8397 -1.3035 0.0149 9 8 4.8836 -2.6555 0.0183 10 7 3.6336 -0.6660 0.0084 11 6 2.3284 -1.1337 0.0044 12 6 1.9152 -2.4696 0.0060 13 1 2.4602 -3.2027 0.5822 14 6 0.7970 -2.8563 -0.7383 15 7 0.3590 -2.0913 -1.7086 16 14 -0.0733 -4.4630 -0.3503 17 1 -0.5672 -4.4328 1.0499 18 1 -1.2210 -4.6403 -1.2759 19 1 0.8761 -5.5927 -0.5161 20 1 -0.3633 -0.0250 -1.0273 21 1 -0.3633 -0.8772 0.5354 22 1 -0.3632 0.9022 0.4921 23 1 4.7080 2.5354 0.0053 24 1 6.8833 1.3744 0.0179 25 1 6.9513 -1.1036 0.0229 26 1 4.8997 -3.0507 -0.8640 27 1 -0.3672 -2.3949 -2.2754 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:57 Heat of formation + Delta-G solvation = 32.519291 kcal Electronic energy + Delta-G solvation = -14518.591298 eV Core-core repulsion = 12049.563715 eV Total energy + Delta-G solvation = -2469.027583 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.08893 -37.60361 -35.43788 -33.57964 -31.99070 -29.77834 -28.18024 -26.98618 -24.55298 -21.78818 -21.29536 -19.46218 -18.25942 -16.90431 -16.05451 -15.51353 -14.88775 -14.78303 -14.31450 -13.61893 -13.10208 -12.21344 -11.92633 -11.73098 -11.56623 -11.50595 -11.31062 -11.00754 -10.88353 -10.47892 -10.30391 -10.11683 -9.67107 -9.10076 -8.66970 -7.35083 -6.85570 -6.56922 -4.32130 1.66144 2.41028 3.00821 3.05145 3.08353 3.69685 3.93413 4.03727 4.65318 4.90471 4.97541 5.44421 5.75942 5.80948 6.02528 6.43043 6.63937 6.78532 6.92058 7.00148 7.04248 7.07973 7.26484 7.35332 7.43737 7.64121 8.22973 8.30459 8.35278 8.73111 8.76200 9.43522 10.19005 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035688 B = 0.011980 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.393156 B = 2336.670336 C = 2987.798867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.019 4.019 3 N -0.473 5.473 4 C 0.120 3.880 5 C -0.060 4.060 6 C -0.159 4.159 7 C -0.193 4.193 8 C 0.286 3.714 9 O -0.479 6.479 10 N -0.411 5.411 11 C 0.179 3.821 12 C -0.454 4.454 13 H 0.085 0.915 14 C 0.082 3.918 15 N -0.796 5.796 16 Si 0.917 3.083 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.267 1.267 20 H 0.069 0.931 21 H 0.052 0.948 22 H 0.034 0.966 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.391 0.609 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -1.042 0.112 4.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.155 4.155 3 N -0.194 5.194 4 C -0.114 4.114 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.217 4.217 8 C 0.140 3.860 9 O -0.285 6.285 10 N -0.100 5.100 11 C 0.069 3.931 12 C -0.489 4.489 13 H 0.103 0.897 14 C -0.137 4.137 15 N -0.422 5.422 16 Si 0.741 3.259 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.192 1.192 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.248 0.752 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.960 -0.154 0.576 4.005 hybrid contribution -0.019 -1.760 -0.472 1.822 sum 3.941 -1.914 0.103 4.382 Atomic orbital electron populations 1.19709 0.88493 0.98814 1.01462 1.20936 0.95305 0.87002 1.12212 1.69747 0.98514 1.31460 1.19653 1.19957 0.93616 0.79910 1.17894 1.20186 0.88803 0.98783 1.00295 1.20548 0.96734 0.93185 1.07780 1.20255 0.95039 0.94304 1.12069 1.18240 0.84337 0.82039 1.01375 1.84699 1.94962 1.15121 1.33746 1.43823 1.05663 1.08739 1.51788 1.18910 0.78516 0.95236 1.00468 1.18238 1.10739 0.92162 1.27771 0.89707 1.25669 0.95751 0.98685 0.93547 1.69928 1.23534 1.36318 1.12451 0.86224 0.78987 0.81109 0.79548 1.18786 1.20297 1.19216 0.91234 0.92877 0.94697 0.85342 0.85940 0.85016 0.75170 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.65 8.61 36.01 0.31 -0.34 15 2 C -0.02 -0.52 6.82 -81.83 -0.56 -1.08 15 3 N -0.47 -12.77 11.23 -8.12 -0.09 -12.86 15 4 C 0.12 3.01 7.77 -155.42 -1.21 1.81 15 5 C -0.06 -1.23 10.14 -39.00 -0.40 -1.63 15 6 C -0.16 -2.83 10.11 -39.21 -0.40 -3.23 15 7 C -0.19 -3.55 9.92 -39.72 -0.39 -3.95 15 8 C 0.29 6.24 7.64 -16.17 -0.12 6.11 15 9 O -0.48 -9.46 12.17 -17.50 -0.21 -9.67 15 10 N -0.41 -10.46 2.99 -60.14 -0.18 -10.64 15 11 C 0.18 4.87 6.35 -83.52 -0.53 4.34 15 12 C -0.45 -11.83 8.39 -38.41 -0.32 -12.15 15 13 H 0.08 2.19 7.43 -52.48 -0.39 1.80 15 14 C 0.08 1.98 4.25 -17.29 -0.07 1.91 15 15 N -0.80 -19.88 10.44 55.54 0.58 -19.30 15 16 Si 0.92 18.31 29.60 -169.99 -5.03 13.28 15 17 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 18 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 19 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 20 H 0.07 1.69 6.99 -51.93 -0.36 1.33 15 21 H 0.05 1.25 7.29 -51.93 -0.38 0.87 15 22 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.13 2.28 8.06 -52.49 -0.42 1.86 15 24 H 0.12 1.71 8.06 -52.48 -0.42 1.28 15 25 H 0.13 1.98 8.06 -52.49 -0.42 1.56 15 26 H 0.39 6.11 9.06 45.56 0.41 6.52 15 27 H 0.28 6.44 8.31 -40.82 -0.34 6.10 15 LS Contribution 239.16 15.07 3.60 3.60 Total: -1.00 -30.30 239.16 -6.57 -36.87 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -1.54 Total: 6.93 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.69 Total: -8.21 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.31 Total: -42.80 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.21 Total: -9.67 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.30 -6.57 -36.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.385 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds