Wall clock time and date at job start Mon Mar 30 2020 02:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32078 * 125.92187 * 2 1 4 4 C 1.33435 * 110.05121 * 179.73803 * 3 2 1 5 5 C 1.40173 * 131.70949 * 180.02562 * 4 3 2 6 6 C 1.37841 * 119.46853 * 179.97438 * 5 4 3 7 7 C 1.39634 * 119.64104 * 0.04262 * 6 5 4 8 8 C 1.36402 * 120.05379 * 359.97438 * 7 6 5 9 9 O 1.35269 * 119.72488 * 180.02562 * 8 7 6 10 10 N 1.36424 * 120.55872 * 0.02562 * 8 7 6 11 11 C 1.38650 * 132.42924 * 180.02562 * 10 8 7 12 12 C 1.39832 * 126.89674 * 359.97438 * 11 10 8 13 13 H 1.08003 * 119.99932 * 37.73059 * 12 11 10 14 14 C 1.39780 * 120.00102 * 217.73786 * 12 11 10 15 15 N 1.31096 * 120.00271 * 18.88849 * 14 12 11 16 16 Si 1.86802 * 120.00121 * 198.89237 * 14 12 11 17 17 H 1.48506 * 109.47038 * 59.99780 * 16 14 12 18 18 H 1.48502 * 109.47104 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47140 * 299.99893 * 16 14 12 20 20 H 1.08992 * 109.47159 * 91.39346 * 1 2 3 21 21 H 1.09002 * 109.46884 * 211.39450 * 1 2 3 22 22 H 1.08997 * 109.46604 * 331.38892 * 1 2 3 23 23 H 1.07998 * 120.26334 * 359.95984 * 5 4 3 24 24 H 1.08006 * 120.17981 * 180.02562 * 6 5 4 25 25 H 1.08000 * 119.97658 * 179.97438 * 7 6 5 26 26 H 0.96697 * 114.00074 * 269.98050 * 9 8 7 27 27 H 0.96996 * 120.00097 * 174.60305 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0696 0.0000 4 6 3.5654 0.7047 0.0057 5 6 4.7486 1.4562 0.0086 6 6 5.9644 0.8067 0.0152 7 6 6.0017 -0.5891 0.0181 8 6 4.8397 -1.3035 0.0149 9 8 4.8836 -2.6555 0.0183 10 7 3.6336 -0.6660 0.0084 11 6 2.3284 -1.1337 0.0044 12 6 1.9152 -2.4696 0.0060 13 1 2.4602 -3.2027 0.5822 14 6 0.7970 -2.8563 -0.7383 15 7 0.3590 -2.0913 -1.7086 16 14 -0.0733 -4.4630 -0.3503 17 1 -0.5672 -4.4328 1.0499 18 1 -1.2210 -4.6403 -1.2759 19 1 0.8761 -5.5927 -0.5161 20 1 -0.3633 -0.0250 -1.0273 21 1 -0.3633 -0.8772 0.5354 22 1 -0.3632 0.9022 0.4921 23 1 4.7080 2.5354 0.0053 24 1 6.8833 1.3744 0.0179 25 1 6.9513 -1.1036 0.0229 26 1 4.8997 -3.0507 -0.8640 27 1 -0.3672 -2.3949 -2.2754 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:57 Heat of formation + Delta-G solvation = 11.553276 kcal Electronic energy + Delta-G solvation = -14519.500453 eV Core-core repulsion = 12049.563715 eV Total energy + Delta-G solvation = -2469.936737 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.88076 -39.23638 -37.08697 -35.38009 -33.76832 -31.58013 -29.92882 -28.79540 -26.32693 -23.49066 -23.02702 -21.32934 -19.95658 -18.57767 -17.87369 -17.17938 -16.59150 -16.48280 -15.90243 -15.33927 -14.80072 -13.89349 -13.74560 -13.42891 -13.35648 -13.27296 -12.95252 -12.72712 -12.51892 -12.07383 -11.97616 -11.76915 -11.44545 -10.88664 -10.58388 -9.12806 -8.65732 -8.38607 -6.22177 0.03723 0.75017 1.40090 1.45128 1.52423 2.01774 2.22405 2.29302 2.88366 3.09463 3.32368 3.81923 4.16425 4.31616 4.51808 4.71812 4.88975 5.05823 5.17995 5.19383 5.33787 5.37971 5.45081 5.58408 5.78508 5.87850 6.38484 6.51269 6.67479 6.87739 6.93942 7.55230 8.42172 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035688 B = 0.011980 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.393156 B = 2336.670336 C = 2987.798867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 C -0.059 4.059 3 N -0.514 5.514 4 C 0.116 3.884 5 C -0.094 4.094 6 C -0.115 4.115 7 C -0.174 4.174 8 C 0.252 3.748 9 O -0.484 6.484 10 N -0.422 5.422 11 C 0.138 3.862 12 C -0.479 4.479 13 H 0.075 0.925 14 C 0.049 3.951 15 N -0.826 5.826 16 Si 0.985 3.015 17 H -0.266 1.266 18 H -0.267 1.267 19 H -0.261 1.261 20 H 0.060 0.940 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.154 0.846 24 H 0.179 0.821 25 H 0.178 0.822 26 H 0.406 0.594 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -1.264 0.184 6.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.192 4.192 3 N -0.235 5.235 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.138 4.138 7 C -0.197 4.197 8 C 0.107 3.893 9 O -0.292 6.292 10 N -0.111 5.111 11 C 0.028 3.972 12 C -0.514 4.514 13 H 0.093 0.907 14 C -0.167 4.167 15 N -0.454 5.454 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.191 1.191 19 H -0.185 1.185 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.171 0.829 24 H 0.197 0.803 25 H 0.195 0.805 26 H 0.265 0.735 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.379 -0.400 0.636 6.423 hybrid contribution -0.403 -1.580 -0.500 1.705 sum 5.975 -1.980 0.137 6.296 Atomic orbital electron populations 1.19564 0.87652 0.99004 1.00827 1.21303 0.96354 0.87507 1.13989 1.69697 0.99631 1.31769 1.22432 1.20885 0.94574 0.80573 1.15995 1.20652 0.88144 1.00150 1.02513 1.21290 0.97707 0.93138 1.01648 1.20951 0.95457 0.94845 1.08476 1.18960 0.84206 0.83090 1.03059 1.84662 1.94762 1.14551 1.35201 1.44119 1.06410 1.09188 1.51338 1.19202 0.79550 0.95782 1.02629 1.18302 1.12309 0.91780 1.28997 0.90678 1.26431 0.95621 1.01892 0.92729 1.69986 1.24103 1.38060 1.13232 0.85206 0.78038 0.77021 0.79134 1.19018 1.19090 1.18488 0.92172 0.93411 0.93546 0.82860 0.80324 0.80512 0.73472 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.64 8.61 71.24 0.61 -0.03 15 2 C -0.06 -3.34 6.82 42.95 0.29 -3.05 15 3 N -0.51 -28.55 11.23 -179.61 -2.02 -30.57 15 4 C 0.12 5.86 7.77 133.60 1.04 6.90 15 5 C -0.09 -3.60 10.14 22.65 0.23 -3.37 15 6 C -0.12 -3.45 10.11 22.51 0.23 -3.23 15 7 C -0.17 -5.60 9.92 22.18 0.22 -5.38 15 8 C 0.25 10.59 7.64 83.55 0.64 11.22 15 9 O -0.48 -18.60 12.17 -85.53 -1.04 -19.64 15 10 N -0.42 -21.63 2.99 -455.08 -1.36 -23.00 15 11 C 0.14 7.81 6.35 38.88 0.25 8.05 15 12 C -0.48 -25.84 8.39 23.03 0.19 -25.65 15 13 H 0.08 4.02 7.43 -2.91 -0.02 4.00 15 14 C 0.05 2.41 4.25 85.18 0.36 2.78 15 15 N -0.83 -42.59 10.44 21.81 0.23 -42.36 15 16 Si 0.98 38.02 29.60 68.60 2.03 40.05 15 17 H -0.27 -10.25 7.11 99.48 0.71 -9.54 15 18 H -0.27 -9.68 7.11 99.48 0.71 -8.98 15 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 20 H 0.06 3.08 6.99 -2.39 -0.02 3.06 15 21 H 0.05 2.36 7.29 -2.39 -0.02 2.35 15 22 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.15 4.99 8.06 -2.91 -0.02 4.96 15 24 H 0.18 3.49 8.06 -2.91 -0.02 3.47 15 25 H 0.18 4.13 8.06 -2.91 -0.02 4.10 15 26 H 0.41 12.37 9.06 -74.06 -0.67 11.70 15 27 H 0.29 13.48 8.31 -92.71 -0.77 12.71 15 Total: -1.00 -68.73 239.16 2.43 -66.29 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.53 Total: 20.97 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 4.06 Total: -11.74 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -3.15 Total: -95.93 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.04 Total: -19.64 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -68.73 2.43 -66.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.847 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds