Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00076 * 2 1 4 4 C 1.38513 * 120.13983 * 0.02562 * 3 2 1 5 5 C 1.38616 * 120.37217 * 179.97438 * 4 3 2 6 6 C 1.37764 * 120.56776 * 0.02562 * 5 4 3 7 7 C 1.39744 * 119.89120 * 0.02562 * 6 5 4 8 8 N 1.35888 * 133.47204 * 180.02562 * 7 6 5 9 9 C 1.30109 * 109.74236 * 179.71656 * 8 7 6 10 10 N 1.36493 * 110.02397 * 0.41910 * 9 8 7 11 11 C 1.37267 * 126.40296 * 179.85183 * 10 9 8 12 12 H 1.07997 * 119.99934 * 200.44810 * 11 10 9 13 13 C 1.38891 * 120.00017 * 20.44459 * 11 10 9 14 14 N 1.31396 * 119.99977 * 11.10084 * 13 11 10 15 15 Si 1.86802 * 119.99980 * 191.10309 * 13 11 10 16 16 H 1.48496 * 109.46991 * 265.63016 * 15 13 11 17 17 H 1.48502 * 109.46998 * 25.63406 * 15 13 11 18 18 H 1.48502 * 109.47075 * 145.63188 * 15 13 11 19 19 C 1.38420 * 107.19051 * 359.58698 * 10 9 8 20 20 H 1.09006 * 109.47292 * 59.99737 * 1 2 3 21 21 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47164 * 299.99962 * 1 2 3 23 23 H 1.08002 * 119.81306 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.71414 * 180.02562 * 5 4 3 25 25 H 1.08003 * 120.05804 * 179.97438 * 6 5 4 26 26 H 1.08001 * 124.98344 * 180.24263 * 9 8 7 27 27 H 0.97001 * 119.99823 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2944 2.3744 0.0005 5 6 1.9187 3.6120 0.0011 6 6 3.2933 3.7033 0.0006 7 6 4.0685 2.5405 -0.0011 8 7 5.4076 2.3097 -0.0015 9 6 5.6327 1.0282 0.0028 10 7 4.4504 0.3460 -0.0030 11 6 4.2970 -1.0180 -0.0038 12 1 3.3675 -1.4567 -0.3352 13 6 5.3373 -1.8341 0.4216 14 7 6.3793 -1.3090 1.0258 15 14 5.2551 -3.6781 0.1346 16 1 4.6955 -4.3421 1.3392 17 1 4.3842 -3.9587 -1.0350 18 1 6.6205 -4.1995 -0.1286 19 6 3.4352 1.2869 -0.0020 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.2159 2.3170 0.0005 24 1 1.3223 4.5124 0.0019 25 1 3.7711 4.6718 0.0006 26 1 6.6113 0.5714 0.0073 27 1 7.1056 -1.8790 1.3232 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259915915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = 11.369266 kcal Electronic energy + Delta-G solvation = -14363.233306 eV Core-core repulsion = 11893.288589 eV Total energy + Delta-G solvation = -2469.944717 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.62432 -39.98895 -37.31261 -35.56065 -33.29970 -30.50248 -29.87757 -27.94647 -27.11981 -23.55975 -22.81207 -22.11941 -20.00752 -18.27415 -17.69266 -17.04809 -16.72487 -16.50881 -15.83288 -15.64022 -15.53915 -14.47756 -14.13150 -13.61369 -13.30451 -13.11830 -13.00404 -12.64843 -12.49298 -12.15085 -12.06224 -11.90200 -11.30345 -10.71708 -10.61301 -9.04241 -8.80131 -8.56922 -6.41600 0.35537 0.84271 1.34710 1.40893 1.52828 2.06209 2.18508 2.53111 2.83405 2.90144 3.16936 3.84024 4.18837 4.31106 4.41090 4.46353 4.51660 4.73702 4.79070 4.87459 5.02196 5.19596 5.27735 5.48182 5.72532 5.79318 6.21427 6.30922 6.59782 6.69862 7.29905 7.48408 8.31750 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.030753 B = 0.011934 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.269021 B = 2345.759941 C = 3202.124500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.144 3.856 4 C -0.232 4.232 5 C -0.089 4.089 6 C -0.134 4.134 7 C 0.036 3.964 8 N -0.566 5.566 9 C 0.211 3.789 10 N -0.297 5.297 11 C -0.356 4.356 12 H 0.113 0.887 13 C 0.002 3.998 14 N -0.878 5.878 15 Si 1.021 2.979 16 H -0.264 1.264 17 H -0.257 1.257 18 H -0.263 1.263 19 C -0.070 4.070 20 H 0.068 0.932 21 H 0.112 0.888 22 H 0.066 0.934 23 H 0.161 0.839 24 H 0.165 0.835 25 H 0.132 0.868 26 H 0.205 0.795 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 0.171 -1.698 10.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.097 3.903 4 C -0.253 4.253 5 C -0.109 4.109 6 C -0.154 4.154 7 C -0.091 4.091 8 N -0.290 5.290 9 C -0.071 4.071 10 N 0.034 4.966 11 C -0.485 4.485 12 H 0.131 0.869 13 C -0.204 4.204 14 N -0.510 5.510 15 Si 0.840 3.160 16 H -0.189 1.189 17 H -0.181 1.181 18 H -0.187 1.187 19 C -0.184 4.184 20 H 0.087 0.913 21 H 0.131 0.869 22 H 0.084 0.916 23 H 0.178 0.822 24 H 0.182 0.818 25 H 0.150 0.850 26 H 0.221 0.779 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.010 0.294 -1.601 9.156 hybrid contribution -0.190 -1.330 0.142 1.351 sum -9.201 -1.036 -1.458 9.373 Atomic orbital electron populations 1.23315 0.76675 1.05079 1.02396 1.86123 1.23446 1.27244 1.88714 1.18189 0.87642 0.85958 0.98540 1.21036 1.00211 0.90503 1.13535 1.20856 0.92750 0.97809 0.99517 1.20266 0.93489 0.95026 1.06639 1.19424 0.89946 0.92975 1.06732 1.70361 1.14899 1.15274 1.28435 1.25298 0.92451 0.86235 1.03074 1.41764 1.04349 1.06060 1.44412 1.20382 1.04142 0.78363 1.45566 0.86932 1.26697 0.94088 1.07126 0.92490 1.69894 1.08963 1.39918 1.32251 0.84534 0.78984 0.72969 0.79514 1.18884 1.18093 1.18702 1.19049 0.89805 0.91412 1.18147 0.91297 0.86949 0.91559 0.82198 0.81751 0.85040 0.77867 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 15 2 O -0.34 -14.15 9.17 -92.40 -0.85 -15.00 15 3 C 0.14 6.43 6.70 22.55 0.15 6.58 15 4 C -0.23 -8.08 9.04 22.43 0.20 -7.87 15 5 C -0.09 -2.96 10.01 22.25 0.22 -2.74 15 6 C -0.13 -5.53 10.10 22.52 0.23 -5.30 15 7 C 0.04 1.87 7.22 39.42 0.28 2.16 15 8 N -0.57 -31.64 11.27 -191.65 -2.16 -33.80 15 9 C 0.21 12.05 11.15 179.91 2.01 14.05 15 10 N -0.30 -17.06 2.94 -346.31 -1.02 -18.08 15 11 C -0.36 -19.67 9.78 84.00 0.82 -18.85 15 12 H 0.11 6.08 6.88 -2.91 -0.02 6.06 15 13 C 0.00 0.10 5.37 84.91 0.46 0.56 15 14 N -0.88 -46.37 10.96 21.65 0.24 -46.14 15 15 Si 1.02 38.79 29.57 68.60 2.03 40.81 15 16 H -0.26 -9.68 7.11 99.48 0.71 -8.98 15 17 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 18 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 19 C -0.07 -3.75 6.81 38.86 0.26 -3.48 15 20 H 0.07 1.52 7.66 -2.38 -0.02 1.50 15 21 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 22 H 0.07 1.50 7.66 -2.39 -0.02 1.48 15 23 H 0.16 4.11 6.28 -2.91 -0.02 4.10 15 24 H 0.17 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.13 4.78 8.06 -2.91 -0.02 4.76 15 26 H 0.21 11.46 6.43 -2.91 -0.02 11.44 15 27 H 0.29 13.93 8.31 -92.71 -0.77 13.16 15 Total: -1.00 -68.42 238.69 5.18 -63.24 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.19 Total: 22.23 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 5.75 Total: -13.27 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -2.94 Total: -98.02 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.85 Total: -15.00 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Total: -68.42 5.18 -63.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.612 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds