Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29914 * 124.85075 * 2 1 4 4 C 1.35923 * 108.70334 * 179.97438 * 3 2 1 5 5 C 1.39699 * 134.13018 * 180.02562 * 4 3 2 6 6 C 1.38251 * 118.11736 * 180.02562 * 5 4 3 7 7 C 1.50704 * 120.26619 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46685 * 269.97402 * 7 6 5 9 9 H 1.07990 * 120.00322 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99436 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99733 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00276 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47018 * 90.00387 * 12 10 8 14 14 H 1.48495 * 109.47467 * 210.00413 * 12 10 8 15 15 H 1.48503 * 109.47055 * 330.00629 * 12 10 8 16 16 C 1.38563 * 119.45994 * 359.97438 * 6 5 4 17 17 N 1.31717 * 121.37643 * 0.02562 * 16 6 5 18 18 C 1.32244 * 121.62645 * 359.97438 * 17 16 6 19 19 O 1.34248 * 124.85048 * 180.27935 * 2 1 3 20 20 H 1.08997 * 109.47432 * 89.99964 * 1 2 3 21 21 H 1.09002 * 109.47633 * 209.99809 * 1 2 3 22 22 H 1.09003 * 109.47210 * 329.99818 * 1 2 3 23 23 H 1.07994 * 120.93879 * 0.02562 * 5 4 3 24 24 H 1.08994 * 109.47263 * 29.97479 * 7 6 5 25 25 H 1.09002 * 109.46695 * 149.97363 * 7 6 5 26 26 H 0.96999 * 120.00093 * 179.97438 * 11 10 8 27 27 H 1.08000 * 119.31030 * 179.97438 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2494 1.0661 0.0000 4 6 3.5550 0.6881 0.0006 5 6 4.7682 1.3807 0.0013 6 6 5.9385 0.6448 0.0012 7 6 7.2744 1.3424 0.0025 8 6 7.7206 1.5757 -1.4179 9 1 7.0989 1.2516 -2.2393 10 6 8.9227 2.2028 -1.6686 11 7 9.3119 2.4069 -2.9081 12 14 9.9977 2.7640 -0.2478 13 1 10.9303 1.6714 0.1289 14 1 10.7764 3.9598 -0.6583 15 1 9.1410 3.1066 0.9159 16 6 5.8733 -0.7392 0.0009 17 7 4.7177 -1.3713 0.0003 18 6 3.5689 -0.7161 0.0003 19 8 2.2741 -1.1017 -0.0054 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 4.7911 2.4604 0.0019 24 1 7.1842 2.2992 0.5168 25 1 8.0080 0.7214 0.5166 26 1 10.1574 2.8484 -3.0846 27 1 6.7891 -1.3117 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = 20.142038 kcal Electronic energy + Delta-G solvation = -13695.862761 eV Core-core repulsion = 11226.298461 eV Total energy + Delta-G solvation = -2469.564301 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.44478 -40.38547 -36.21473 -35.68483 -33.84271 -32.90622 -30.41560 -28.87243 -25.52679 -24.32521 -22.90991 -22.73265 -19.63737 -18.99268 -18.27859 -18.20788 -17.17957 -16.27830 -15.35523 -14.89214 -14.73500 -14.62319 -14.24939 -14.01920 -13.77504 -13.50977 -13.34829 -12.84608 -12.61115 -12.38350 -12.21915 -11.92198 -11.64858 -10.77941 -10.53604 -10.14419 -9.69658 -8.28657 -6.36097 -0.51674 -0.01357 0.96721 1.28831 1.43035 1.44908 1.55904 2.38207 2.53707 2.69575 3.06526 3.18127 3.48243 3.89856 3.93449 4.07470 4.46164 4.57297 4.63281 4.73275 4.84252 4.92936 5.02916 5.19486 5.36163 5.44678 5.55538 6.22138 6.35526 6.55420 6.70287 7.27984 8.87823 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.059515 B = 0.006501 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.360136 B = 4306.308527 C = 4415.108986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.261 3.739 3 N -0.505 5.505 4 C -0.032 4.032 5 C -0.035 4.035 6 C -0.093 4.093 7 C 0.030 3.970 8 C -0.526 4.526 9 H 0.026 0.974 10 C 0.010 3.990 11 N -0.949 5.949 12 Si 0.952 3.048 13 H -0.261 1.261 14 H -0.289 1.289 15 H -0.239 1.239 16 C 0.144 3.856 17 N -0.475 5.475 18 C 0.171 3.829 19 O -0.214 6.214 20 H 0.122 0.878 21 H 0.120 0.880 22 H 0.124 0.876 23 H 0.149 0.851 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.268 0.732 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 -4.149 9.381 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.049 3.951 3 N -0.235 5.235 4 C -0.145 4.145 5 C -0.062 4.062 6 C -0.096 4.096 7 C -0.008 4.008 8 C -0.564 4.564 9 H 0.044 0.956 10 C -0.187 4.187 11 N -0.589 5.589 12 Si 0.775 3.225 13 H -0.185 1.185 14 H -0.215 1.215 15 H -0.162 1.162 16 C -0.018 4.018 17 N -0.191 5.191 18 C -0.007 4.007 19 O -0.105 6.105 20 H 0.140 0.860 21 H 0.139 0.861 22 H 0.142 0.858 23 H 0.167 0.833 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.243 -4.380 9.274 17.552 hybrid contribution 1.080 0.536 -0.226 1.227 sum -13.163 -3.844 9.049 16.429 Atomic orbital electron populations 1.20870 0.75716 1.07682 1.07239 1.27941 0.98354 0.76634 0.92156 1.70579 1.00371 1.30116 1.22421 1.20641 0.93465 0.93058 1.07339 1.20826 0.87917 1.01413 0.96019 1.21083 0.96767 0.95023 0.96722 1.18627 0.89379 0.96695 0.96128 1.21094 1.04825 1.39026 0.91488 0.95593 1.25988 0.99056 0.95089 0.98593 1.70059 1.23111 1.44003 1.21727 0.85628 0.78924 0.78302 0.79661 1.18537 1.21470 1.16211 1.23095 0.93598 0.91924 0.93134 1.66368 0.95234 1.41228 1.16318 1.20408 0.85327 0.90215 1.04789 1.84385 1.13600 1.37120 1.75345 0.86021 0.86143 0.85797 0.83280 0.93733 0.92650 0.92285 0.78439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.67 10.51 71.24 0.75 0.08 15 2 C 0.26 6.99 8.23 88.39 0.73 7.72 15 3 N -0.50 -17.22 11.34 -296.16 -3.36 -20.58 15 4 C -0.03 -1.25 7.26 39.40 0.29 -0.96 15 5 C -0.03 -1.39 9.89 22.63 0.22 -1.16 15 6 C -0.09 -3.74 5.08 -19.78 -0.10 -3.84 15 7 C 0.03 1.28 4.19 29.10 0.12 1.40 15 8 C -0.53 -28.96 9.65 25.60 0.25 -28.71 15 9 H 0.03 1.62 7.98 -2.92 -0.02 1.60 15 10 C 0.01 0.57 5.47 84.66 0.46 1.03 15 11 N -0.95 -58.01 13.96 21.45 0.30 -57.71 15 12 Si 0.95 41.24 27.47 68.60 1.88 43.12 15 13 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 14 H -0.29 -12.57 7.11 99.48 0.71 -11.86 15 15 H -0.24 -9.33 6.54 99.48 0.65 -8.68 15 16 C 0.14 5.42 10.83 84.79 0.92 6.34 15 17 N -0.47 -18.61 10.38 -308.23 -3.20 -21.81 15 18 C 0.17 6.62 8.60 85.17 0.73 7.35 15 19 O -0.21 -7.05 10.77 -9.96 -0.11 -7.16 15 20 H 0.12 0.96 8.14 -2.39 -0.02 0.94 15 21 H 0.12 0.79 8.14 -2.39 -0.02 0.77 15 22 H 0.12 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.15 5.59 8.06 -2.91 -0.02 5.56 15 24 H 0.04 1.85 7.15 -2.39 -0.02 1.83 15 25 H 0.06 2.17 7.52 -2.39 -0.02 2.15 15 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 27 H 0.20 6.28 8.06 -2.91 -0.02 6.25 15 Total: -1.00 -71.79 245.87 1.02 -70.78 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.13 Total: 4.11 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 4.37 Total: -10.75 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -6.26 Total: -100.09 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.11 Total: -7.16 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.12 kcal Total: -71.79 1.02 -70.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.918 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds