Wall clock time and date at job start Mon Mar 30 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.39835 * 125.26609 * 2 1 4 4 C 1.32637 * 109.71004 * 179.97438 * 3 2 1 5 5 C 1.40765 * 126.35680 * 179.97438 * 4 3 2 6 6 H 1.08000 * 120.00358 * 180.02562 * 5 4 3 7 7 C 1.39949 * 119.99695 * 359.97438 * 5 4 3 8 8 N 1.30866 * 120.00090 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46800 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47159 * 120.00336 * 9 7 5 12 12 H 1.48505 * 109.47003 * 240.00580 * 9 7 5 13 13 C 1.47332 * 107.29140 * 0.02562 * 4 3 2 14 14 C 1.39398 * 133.67215 * 179.97438 * 13 4 3 15 15 C 1.36662 * 119.91824 * 180.28065 * 14 13 4 16 16 C 1.39247 * 120.47819 * 359.47742 * 15 14 13 17 17 O 1.35883 * 119.77794 * 180.28977 * 16 15 14 18 18 C 1.38300 * 120.44612 * 0.50841 * 16 15 14 19 19 C 1.37487 * 125.27529 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47595 * 270.04117 * 1 2 3 21 21 H 1.09000 * 109.47081 * 30.04859 * 1 2 3 22 22 H 1.09006 * 109.46902 * 150.04539 * 1 2 3 23 23 H 0.97002 * 119.99427 * 179.97438 * 8 7 5 24 24 H 1.08002 * 120.03777 * 359.97438 * 14 13 4 25 25 H 1.08000 * 119.76466 * 179.72652 * 15 14 13 26 26 H 0.96697 * 113.99660 * 270.21236 * 17 16 15 27 27 H 1.07999 * 120.15015 * 179.74289 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2723 1.1417 0.0000 4 6 3.5501 0.7860 0.0006 5 6 4.6580 1.6543 0.0002 6 1 5.6600 1.2514 0.0003 7 6 4.4611 3.0399 -0.0013 8 7 3.2470 3.5282 -0.0019 9 14 5.9313 4.1923 -0.0025 10 1 7.1846 3.3957 -0.0021 11 1 5.8891 5.0473 -1.2158 12 1 5.8890 5.0499 1.2092 13 6 3.5947 -0.6866 0.0003 14 6 4.6317 -1.6182 0.0002 15 6 4.3471 -2.9549 -0.0058 16 6 3.0263 -3.3958 -0.0009 17 8 2.7597 -4.7282 -0.0011 18 6 1.9840 -2.4868 -0.0005 19 6 2.2590 -1.1224 0.0005 20 1 -0.3634 0.0007 1.0276 21 1 -0.3633 0.8896 -0.5146 22 1 -0.3633 -0.8905 -0.5132 23 1 3.1106 4.4886 -0.0026 24 1 5.6587 -1.2840 -0.0001 25 1 5.1525 -3.6745 -0.0104 26 1 2.6822 -5.1137 -0.8845 27 1 0.9614 -2.8341 -0.0008 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962508.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:33 Heat of formation + Delta-G solvation = 11.342463 kcal Electronic energy + Delta-G solvation = -14005.243955 eV Core-core repulsion = 11535.298076 eV Total energy + Delta-G solvation = -2469.945879 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44856 -39.17854 -36.20436 -35.70484 -33.35228 -31.01343 -29.29229 -29.04617 -25.93370 -23.55558 -22.40480 -21.59816 -19.33732 -18.14121 -17.66528 -16.86369 -16.46783 -16.17354 -15.77071 -15.11751 -14.93820 -14.50529 -13.72790 -13.58792 -13.39217 -12.96059 -12.92325 -12.55278 -12.34904 -11.95815 -11.78125 -11.35252 -11.22554 -10.51194 -10.40291 -9.04933 -8.66473 -8.47376 -6.45918 0.28787 0.78245 1.40182 1.43990 1.60770 2.17484 2.22178 2.30453 2.86725 3.41953 3.53734 3.96008 4.06810 4.28584 4.47178 4.51002 4.64398 4.68980 4.78286 4.99468 5.18774 5.39151 5.48235 5.59578 5.69727 6.03333 6.31335 6.69715 6.76881 6.98012 7.01868 7.85623 8.50687 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038312 B = 0.009097 C = 0.007386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.675009 B = 3077.305936 C = 3790.281179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.453 5.453 3 N -0.362 5.362 4 C 0.190 3.810 5 C -0.458 4.458 6 H 0.097 0.903 7 C 0.021 3.979 8 N -0.803 5.803 9 Si 0.996 3.004 10 H -0.248 1.248 11 H -0.269 1.269 12 H -0.270 1.270 13 C -0.227 4.227 14 C -0.026 4.026 15 C -0.211 4.211 16 C 0.150 3.850 17 O -0.501 6.501 18 C -0.204 4.204 19 C 0.125 3.875 20 H 0.059 0.941 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.280 0.720 24 H 0.132 0.868 25 H 0.150 0.850 26 H 0.410 0.590 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -8.775 -1.885 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.238 5.238 3 N -0.185 5.185 4 C 0.032 3.968 5 C -0.497 4.497 6 H 0.115 0.885 7 C -0.196 4.196 8 N -0.431 5.431 9 Si 0.816 3.184 10 H -0.171 1.171 11 H -0.194 1.194 12 H -0.195 1.195 13 C -0.236 4.236 14 C -0.046 4.046 15 C -0.232 4.232 16 C 0.103 3.897 17 O -0.314 6.314 18 C -0.227 4.227 19 C 0.007 3.993 20 H 0.078 0.922 21 H 0.090 0.910 22 H 0.113 0.887 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.168 0.832 26 H 0.269 0.731 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.861 -7.587 -1.290 7.744 hybrid contribution 0.558 0.083 -0.435 0.712 sum -0.303 -7.504 -1.725 7.706 Atomic orbital electron populations 1.21531 0.74967 1.03553 1.02089 1.48935 1.06331 1.02047 1.66495 1.78315 1.01550 1.01928 1.36735 1.20915 0.92674 0.89338 0.93829 1.19082 0.92445 0.90783 1.47433 0.88493 1.26951 1.00001 1.00427 0.92251 1.70075 1.24070 1.14540 1.34438 0.84942 0.77727 0.77243 0.78453 1.17094 1.19388 1.19492 1.20599 0.94018 0.94447 1.14522 1.20298 0.98042 0.91794 0.94474 1.20883 0.96463 0.95159 1.10703 1.18008 0.91154 0.82921 0.97595 1.84712 1.93457 1.17893 1.35345 1.20245 1.00248 0.88484 1.13760 1.19086 0.91520 0.89901 0.98842 0.92247 0.91004 0.88742 0.90972 0.85002 0.83206 0.73089 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.46 11.37 127.77 1.45 5.92 15 2 N -0.45 -22.62 4.05 -361.04 -1.46 -24.09 15 3 N -0.36 -21.49 10.69 -48.51 -0.52 -22.00 15 4 C 0.19 11.05 6.92 42.03 0.29 11.34 15 5 C -0.46 -25.51 9.41 23.30 0.22 -25.29 15 6 H 0.10 4.94 7.85 -2.91 -0.02 4.92 15 7 C 0.02 1.12 5.50 85.25 0.47 1.59 15 8 N -0.80 -45.69 11.94 21.83 0.26 -45.43 15 9 Si 1.00 39.27 29.56 68.60 2.03 41.30 15 10 H -0.25 -9.14 7.11 99.48 0.71 -8.43 15 11 H -0.27 -10.23 7.11 99.48 0.71 -9.53 15 12 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 13 C -0.23 -11.45 6.30 -20.05 -0.13 -11.58 15 14 C -0.03 -1.07 10.03 22.18 0.22 -0.84 15 15 C -0.21 -7.21 9.91 22.14 0.22 -6.99 15 16 C 0.15 5.04 6.69 22.53 0.15 5.19 15 17 O -0.50 -13.06 13.49 -92.23 -1.24 -14.30 15 18 C -0.20 -7.69 9.90 22.51 0.22 -7.47 15 19 C 0.13 5.89 6.84 39.04 0.27 6.15 15 20 H 0.06 2.02 8.14 -2.39 -0.02 2.01 15 21 H 0.07 2.65 8.14 -2.39 -0.02 2.63 15 22 H 0.09 2.77 8.11 -2.38 -0.02 2.75 15 23 H 0.28 14.42 8.30 -92.71 -0.77 13.65 15 24 H 0.13 4.90 8.06 -2.91 -0.02 4.87 15 25 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 26 H 0.41 6.11 9.06 -74.06 -0.67 5.43 15 27 H 0.14 4.36 8.06 -2.91 -0.02 4.34 15 Total: -1.00 -72.44 247.72 2.98 -69.46 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.53 Total: 17.06 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: 3.39 Total: -22.00 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.72 Total: -91.52 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.24 Total: -14.30 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -72.44 2.98 -69.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962508.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.805 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds