Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30099 * 124.99177 * 2 1 4 4 C 1.35887 * 109.74113 * 180.02562 * 3 2 1 5 5 C 1.39787 * 133.46196 * 179.97438 * 4 3 2 6 6 C 1.37720 * 119.88404 * 180.27539 * 5 4 3 7 7 C 1.38654 * 120.57288 * 359.44828 * 6 5 4 8 8 C 1.38470 * 120.37002 * 0.55558 * 7 6 5 9 9 O 1.35898 * 120.14088 * 179.69837 * 8 7 6 10 10 C 1.39176 * 119.72548 * 359.73001 * 8 7 6 11 11 N 1.36496 * 124.98963 * 180.02562 * 2 1 3 12 12 C 1.37268 * 126.40800 * 359.92733 * 11 2 1 13 13 H 1.07999 * 120.00347 * 136.55883 * 12 11 2 14 14 C 1.38899 * 119.99546 * 316.56253 * 12 11 2 15 15 N 1.31388 * 120.00239 * 342.39712 * 14 12 11 16 16 Si 1.86798 * 119.99592 * 162.40465 * 14 12 11 17 17 H 1.48492 * 109.47517 * 59.99967 * 16 14 12 18 18 H 1.48503 * 109.46957 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47055 * 299.99499 * 16 14 12 20 20 H 1.08999 * 109.46835 * 275.52075 * 1 2 3 21 21 H 1.08998 * 109.47318 * 35.52206 * 1 2 3 22 22 H 1.08998 * 109.47094 * 155.52339 * 1 2 3 23 23 H 1.07997 * 120.05161 * 0.02562 * 5 4 3 24 24 H 1.08000 * 119.71387 * 179.70090 * 6 5 4 25 25 H 1.08007 * 119.81554 * 180.28077 * 7 6 5 26 26 H 0.96698 * 114.00426 * 270.02575 * 9 8 7 27 27 H 0.96996 * 120.00302 * 185.07426 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2531 1.0658 0.0000 4 6 3.5641 0.7084 -0.0006 5 6 4.7587 1.4343 -0.0013 6 6 5.9652 0.7703 -0.0075 7 6 6.0075 -0.6156 -0.0016 8 6 4.8347 -1.3518 -0.0009 9 8 4.8815 -2.7099 -0.0013 10 6 3.6076 -0.6950 -0.0005 11 7 2.2898 -1.1183 -0.0005 12 6 1.8519 -2.4192 0.0003 13 1 2.3225 -3.1479 -0.6431 14 6 0.8034 -2.7985 0.8286 15 7 0.4588 -2.0373 1.8426 16 14 -0.1167 -4.3908 0.5009 17 1 0.8293 -5.5331 0.5738 18 1 -1.1824 -4.5655 1.5203 19 1 -0.7282 -4.3399 -0.8513 20 1 -0.3633 0.0989 1.0229 21 1 -0.3634 0.8364 -0.5971 22 1 -0.3633 -0.9353 -0.4258 23 1 4.7354 2.5141 -0.0010 24 1 6.8865 1.3339 -0.0129 25 1 6.9605 -1.1238 -0.0019 26 1 4.8949 -3.1028 -0.8847 27 1 -0.2233 -2.3366 2.4639 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997974.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = -1.428003 kcal Electronic energy + Delta-G solvation = -14513.367622 eV Core-core repulsion = 12042.867974 eV Total energy + Delta-G solvation = -2470.499648 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.66276 -39.14455 -37.18977 -35.46888 -33.25324 -31.70645 -29.99179 -28.27978 -26.98905 -22.92749 -22.81012 -21.83106 -19.79325 -18.44685 -17.71330 -17.20035 -16.49990 -16.17968 -15.96509 -15.24220 -15.02795 -14.02997 -13.76342 -13.60346 -13.45883 -13.37468 -13.03199 -12.66866 -12.53986 -12.17556 -11.95479 -11.62000 -11.24204 -10.71115 -10.62081 -8.95312 -8.77225 -8.60780 -6.49973 0.18555 0.85109 1.37142 1.41873 1.50930 2.03969 2.18472 2.76661 2.80993 3.05377 3.47194 3.64521 4.26045 4.33741 4.56812 4.61726 4.78728 4.84665 4.89654 5.07711 5.15448 5.32195 5.38340 5.65374 5.72249 5.85779 6.19919 6.29482 6.69410 6.93221 7.35117 7.51007 8.40720 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035310 B = 0.012078 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.782295 B = 2317.671421 C = 2959.587203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C 0.242 3.758 3 N -0.564 5.564 4 C 0.017 3.983 5 C -0.103 4.103 6 C -0.113 4.113 7 C -0.157 4.157 8 C 0.111 3.889 9 O -0.502 6.502 10 C -0.056 4.056 11 N -0.300 5.300 12 C -0.376 4.376 13 H 0.105 0.895 14 C 0.021 3.979 15 N -0.869 5.869 16 Si 1.004 2.996 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.254 1.254 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.135 0.865 24 H 0.168 0.832 25 H 0.156 0.844 26 H 0.393 0.607 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.936 -1.017 -4.334 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.020 4.020 3 N -0.289 5.289 4 C -0.107 4.107 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.178 4.178 8 C 0.064 3.936 9 O -0.312 6.312 10 C -0.171 4.171 11 N 0.028 4.972 12 C -0.503 4.503 13 H 0.122 0.878 14 C -0.188 4.188 15 N -0.499 5.499 16 Si 0.824 3.176 17 H -0.189 1.189 18 H -0.195 1.195 19 H -0.178 1.178 20 H 0.092 0.908 21 H 0.102 0.898 22 H 0.085 0.915 23 H 0.153 0.847 24 H 0.185 0.815 25 H 0.174 0.826 26 H 0.250 0.750 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.329 -0.266 -3.576 4.893 hybrid contribution -0.299 -1.582 -0.194 1.621 sum 3.030 -1.847 -3.770 5.177 Atomic orbital electron populations 1.19990 0.84406 1.02126 1.02675 1.23875 0.96506 0.81254 1.00383 1.70224 1.01161 1.28484 1.29011 1.19526 0.93093 0.90627 1.07438 1.20434 0.89067 0.99727 1.03041 1.20964 0.97494 0.93327 1.01546 1.21247 0.96297 0.94580 1.05674 1.17781 0.89448 0.82677 1.03685 1.84777 1.96239 1.16256 1.33970 1.20251 0.87864 0.96094 1.12856 1.41420 1.02304 1.06772 1.46686 1.19865 1.18937 0.84554 1.26968 0.87778 1.26572 0.96769 1.02931 0.92494 1.70050 1.29214 1.39561 1.11090 0.84851 0.77631 0.75860 0.79242 1.18857 1.19515 1.17760 0.90794 0.89767 0.91487 0.84677 0.81479 0.82647 0.75048 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.53 8.68 71.24 0.62 -0.91 15 2 C 0.24 12.97 7.28 137.78 1.00 13.97 15 3 N -0.56 -30.38 11.27 -179.60 -2.02 -32.41 15 4 C 0.02 0.88 7.22 39.42 0.28 1.17 15 5 C -0.10 -4.13 10.10 22.52 0.23 -3.91 15 6 C -0.11 -3.71 10.01 22.25 0.22 -3.49 15 7 C -0.16 -5.57 9.97 22.42 0.22 -5.35 15 8 C 0.11 4.93 6.72 22.55 0.15 5.08 15 9 O -0.50 -20.81 12.74 -92.40 -1.18 -21.99 15 10 C -0.06 -2.94 6.81 38.86 0.26 -2.68 15 11 N -0.30 -16.56 2.79 -332.89 -0.93 -17.49 15 12 C -0.38 -19.85 8.98 84.00 0.75 -19.10 15 13 H 0.10 5.24 7.76 -2.91 -0.02 5.22 15 14 C 0.02 1.04 4.00 84.92 0.34 1.38 15 15 N -0.87 -45.67 11.11 21.65 0.24 -45.43 15 16 Si 1.00 37.80 29.59 68.60 2.03 39.83 15 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 18 H -0.27 -9.81 7.11 99.48 0.71 -9.10 15 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 15 20 H 0.07 3.45 7.43 -2.39 -0.02 3.43 15 21 H 0.08 3.28 8.14 -2.39 -0.02 3.26 15 22 H 0.07 2.99 6.84 -2.39 -0.02 2.97 15 23 H 0.14 4.72 8.06 -2.91 -0.02 4.70 15 24 H 0.17 3.82 8.06 -2.91 -0.02 3.79 15 25 H 0.16 4.29 8.06 -2.91 -0.02 4.27 15 26 H 0.39 12.36 9.06 -74.06 -0.67 11.69 15 27 H 0.29 13.86 8.32 -92.71 -0.77 13.09 15 Total: -1.00 -68.10 240.31 2.76 -65.34 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.53 Total: 25.97 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.09 Total: -13.83 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -2.71 Total: -95.32 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.18 Total: -21.99 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -68.10 2.76 -65.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997974.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.908 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds