Wall clock time and date at job start Mon Mar 30 2020 02:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30059 * 124.98952 * 2 1 4 4 C 1.35891 * 109.73230 * 179.97438 * 3 2 1 5 5 C 1.40458 * 107.05251 * 359.97438 * 4 3 2 6 6 C 1.38772 * 119.99615 * 180.02562 * 5 4 3 7 7 C 1.38014 * 119.94050 * 359.97438 * 6 5 4 8 8 C 1.38610 * 120.49248 * 0.02562 * 7 6 5 9 9 C 1.38292 * 120.44301 * 0.02562 * 8 7 6 10 10 O 1.35878 * 120.16148 * 179.97438 * 9 8 7 11 11 N 1.36578 * 124.99250 * 179.97438 * 2 1 3 12 12 C 1.37298 * 126.40720 * 0.07591 * 11 2 1 13 13 H 1.08002 * 119.99555 * 320.56868 * 12 11 2 14 14 C 1.38890 * 120.00430 * 140.55462 * 12 11 2 15 15 N 1.31400 * 119.99862 * 156.09493 * 14 12 11 16 16 Si 1.86804 * 120.00199 * 336.10623 * 14 12 11 17 17 H 1.48496 * 109.47338 * 95.20430 * 16 14 12 18 18 H 1.48499 * 109.46888 * 215.21009 * 16 14 12 19 19 H 1.48501 * 109.46723 * 335.20390 * 16 14 12 20 20 H 1.08993 * 109.46685 * 95.13316 * 1 2 3 21 21 H 1.09006 * 109.46616 * 215.13172 * 1 2 3 22 22 H 1.08996 * 109.47147 * 335.13008 * 1 2 3 23 23 H 1.07994 * 120.02696 * 180.02562 * 6 5 4 24 24 H 1.08006 * 119.75190 * 180.02562 * 7 6 5 25 25 H 1.07996 * 119.77583 * 179.72692 * 8 7 6 26 26 H 0.96703 * 114.00426 * 89.99253 * 10 9 8 27 27 H 0.97003 * 119.99574 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2529 1.0655 0.0000 4 6 3.5639 0.7079 0.0006 5 6 3.6079 -0.6960 0.0015 6 6 4.8309 -1.3518 0.0028 7 6 6.0031 -0.6233 0.0026 8 6 5.9701 0.7624 0.0017 9 6 4.7614 1.4345 0.0014 10 8 4.7357 2.7930 0.0010 11 7 2.2903 -1.1189 0.0005 12 6 1.8524 -2.4202 -0.0004 13 1 0.9948 -2.7016 0.5927 14 6 2.5120 -3.3744 -0.7641 15 7 2.4328 -4.6452 -0.4395 16 14 3.5120 -2.8513 -2.2527 17 1 4.9368 -2.6986 -1.8632 18 1 3.3967 -3.8836 -3.3140 19 1 2.9971 -1.5558 -2.7644 20 1 -0.3632 -0.0919 -1.0235 21 1 -0.3633 -0.8405 0.5914 22 1 -0.3633 0.9323 0.4322 23 1 4.8653 -2.4312 0.0032 24 1 6.9533 -1.1368 0.0032 25 1 6.8944 1.3209 0.0060 26 1 4.7284 3.1861 -0.8825 27 1 2.8938 -5.3116 -0.9727 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260047253.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:40 Heat of formation + Delta-G solvation = 5.530164 kcal Electronic energy + Delta-G solvation = -14527.579718 eV Core-core repulsion = 12057.381798 eV Total energy + Delta-G solvation = -2470.197919 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.93046 -39.31312 -36.95800 -35.94536 -33.60934 -32.09103 -30.15099 -28.28052 -27.15548 -23.36611 -22.98092 -21.21008 -20.28135 -18.64035 -18.16973 -17.19261 -16.61225 -16.35339 -16.14227 -15.38320 -15.01433 -14.70623 -14.08152 -13.81839 -13.59203 -13.44472 -13.11071 -12.98218 -12.34672 -12.29409 -11.85448 -11.72389 -11.63017 -10.90635 -10.69347 -9.19906 -8.91677 -8.81593 -6.60558 0.01071 0.66821 1.11614 1.19202 1.29834 1.90842 1.98910 2.32622 2.68778 2.87178 3.37421 3.42596 4.05515 4.23638 4.41800 4.49176 4.62481 4.72470 4.76546 4.95607 5.00698 5.11141 5.41106 5.51347 5.65189 5.75838 5.91277 6.04335 6.57585 6.87026 7.14834 7.25285 8.19155 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.015176 C = 0.011033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.321153 B = 1844.547971 C = 2537.138157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.210 3.790 3 N -0.531 5.531 4 C -0.019 4.019 5 C -0.003 4.003 6 C -0.130 4.130 7 C -0.105 4.105 8 C -0.153 4.153 9 C 0.133 3.867 10 O -0.497 6.497 11 N -0.325 5.325 12 C -0.375 4.375 13 H 0.103 0.897 14 C 0.061 3.939 15 N -0.854 5.854 16 Si 0.912 3.088 17 H -0.223 1.223 18 H -0.267 1.267 19 H -0.288 1.288 20 H 0.088 0.912 21 H 0.079 0.921 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.164 0.836 25 H 0.166 0.834 26 H 0.401 0.599 27 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 5.991 -2.914 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.052 4.052 3 N -0.254 5.254 4 C -0.142 4.142 5 C -0.117 4.117 6 C -0.150 4.150 7 C -0.125 4.125 8 C -0.174 4.174 9 C 0.086 3.914 10 O -0.308 6.308 11 N 0.002 4.998 12 C -0.502 4.502 13 H 0.121 0.879 14 C -0.151 4.151 15 N -0.484 5.484 16 Si 0.735 3.265 17 H -0.146 1.146 18 H -0.193 1.193 19 H -0.214 1.214 20 H 0.107 0.893 21 H 0.097 0.903 22 H 0.118 0.882 23 H 0.130 0.870 24 H 0.181 0.819 25 H 0.184 0.816 26 H 0.259 0.741 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.564 6.326 -2.322 8.139 hybrid contribution 0.153 -1.050 -1.030 1.478 sum 4.717 5.276 -3.352 7.831 Atomic orbital electron populations 1.20212 0.82625 1.04281 1.04065 1.24485 0.97411 0.81056 1.02273 1.70240 1.00696 1.28130 1.26328 1.19740 0.93097 0.91173 1.10223 1.19270 0.87324 0.94788 1.10315 1.20321 0.90202 0.99643 1.04849 1.20984 0.97200 0.93532 1.00770 1.21265 0.96764 0.94304 1.05033 1.17748 0.89141 0.82596 1.01881 1.84699 1.96300 1.15264 1.34586 1.41606 1.03169 1.06464 1.48591 1.19120 1.18590 0.80922 1.31575 0.87924 1.25788 0.96150 0.94425 0.98724 1.69798 1.39317 1.01978 1.37339 0.86398 0.82290 0.78017 0.79787 1.14644 1.19286 1.21424 0.89321 0.90253 0.88158 0.87028 0.81877 0.81619 0.74100 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.93 10.10 71.24 0.72 -1.21 15 2 C 0.21 9.96 7.83 137.76 1.08 11.04 15 3 N -0.53 -25.94 11.27 -179.30 -2.02 -27.97 15 4 C -0.02 -0.89 7.17 39.50 0.28 -0.60 15 5 C 0.00 -0.15 5.28 38.78 0.20 0.05 15 6 C -0.13 -5.68 6.90 22.34 0.15 -5.53 15 7 C -0.10 -3.61 10.02 22.31 0.22 -3.39 15 8 C -0.15 -5.02 9.96 22.37 0.22 -4.80 15 9 C 0.13 5.26 6.74 22.73 0.15 5.41 15 10 O -0.50 -17.06 13.51 -92.18 -1.25 -18.30 15 11 N -0.32 -16.77 2.44 -333.16 -0.81 -17.58 15 12 C -0.37 -20.13 9.84 83.99 0.83 -19.30 15 13 H 0.10 5.69 7.76 -2.91 -0.02 5.67 15 14 C 0.06 3.17 4.90 84.91 0.42 3.59 15 15 N -0.85 -45.07 13.96 21.65 0.30 -44.77 15 16 Si 0.91 41.44 24.53 68.60 1.68 43.13 15 17 H -0.22 -9.28 5.50 99.48 0.55 -8.74 15 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 19 H -0.29 -14.37 7.11 99.48 0.71 -13.66 15 20 H 0.09 2.89 8.14 -2.39 -0.02 2.87 15 21 H 0.08 2.76 7.68 -2.38 -0.02 2.74 15 22 H 0.10 3.08 8.14 -2.39 -0.02 3.06 15 23 H 0.11 5.02 5.81 -2.91 -0.02 5.00 15 24 H 0.16 4.20 8.06 -2.91 -0.02 4.18 15 25 H 0.17 4.00 8.06 -2.91 -0.02 3.97 15 26 H 0.40 9.72 9.06 -74.06 -0.67 9.05 15 27 H 0.29 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -66.00 235.18 2.56 -63.44 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.38 Total: 16.79 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.28 Total: -14.73 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.53 Total: -90.32 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.25 Total: -18.30 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.68 Total: 43.13 kcal Total: -66.00 2.56 -63.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260047253.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.967 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds