Wall clock time and date at job start Mon Mar 30 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99621 * 2 1 4 4 H 1.48500 * 109.47327 * 270.00325 * 3 2 1 5 5 H 1.48503 * 109.47000 * 30.00519 * 3 2 1 6 6 H 1.48499 * 109.46687 * 150.00442 * 3 2 1 7 7 C 1.37876 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99633 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00099 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.46752 * 300.00223 * 9 7 2 11 11 N 1.46900 * 109.46855 * 59.99852 * 9 7 2 12 12 C 1.50699 * 109.47015 * 179.97438 * 9 7 2 13 13 C 1.34034 * 126.91167 * 265.00043 * 12 9 7 14 14 O 1.34545 * 110.17540 * 180.02562 * 13 12 9 15 15 C 1.34367 * 110.89919 * 359.97438 * 14 13 12 16 16 C 1.39156 * 134.63639 * 180.02562 * 15 14 13 17 17 C 1.37793 * 118.92085 * 180.02562 * 16 15 14 18 18 N 1.32254 * 121.51752 * 359.97438 * 17 16 15 19 19 C 1.31767 * 122.11132 * 0.02562 * 18 17 16 20 20 C 1.39145 * 120.09647 * 0.02562 * 19 18 17 21 21 H 0.96994 * 120.00688 * 359.97438 * 1 2 3 22 22 H 1.00901 * 110.99951 * 60.00138 * 11 9 7 23 23 H 1.00902 * 110.99832 * 183.95665 * 11 9 7 24 24 H 1.08002 * 124.91428 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.53812 * 0.02562 * 16 15 14 26 26 H 1.07999 * 119.24602 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.95083 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8745 -0.6799 -0.8911 11 7 4.0017 -0.5017 1.1983 12 6 4.0140 -2.6147 -0.0010 13 6 4.3708 -3.3423 1.0666 14 8 4.7689 -4.5682 0.6807 15 6 4.6906 -4.6995 -0.6542 16 6 4.9688 -5.7240 -1.5539 17 6 4.7657 -5.5032 -2.8988 18 7 4.3140 -4.3445 -3.3487 19 6 4.0344 -3.3408 -2.5421 20 6 4.2120 -3.4789 -1.1689 21 1 -0.4851 0.8399 0.0004 22 1 3.6785 -0.9594 2.0374 23 1 5.0082 -0.4315 1.1894 24 1 4.3436 -2.9945 2.0888 25 1 5.3380 -6.6766 -1.2037 26 1 4.9804 -6.2945 -3.6017 27 1 3.6676 -2.4093 -2.9474 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:56 Heat of formation + Delta-G solvation = 47.854756 kcal Electronic energy + Delta-G solvation = -14123.249702 eV Core-core repulsion = 11654.887115 eV Total energy + Delta-G solvation = -2468.362587 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.27311 -38.63317 -35.61187 -32.22652 -31.41619 -31.30818 -28.85676 -26.53866 -23.84597 -22.66925 -22.57540 -19.45019 -17.37475 -17.01903 -16.87954 -15.82918 -15.56501 -14.79291 -14.24623 -14.16431 -14.03139 -13.15921 -13.13043 -13.03961 -12.29485 -11.66830 -11.11139 -10.90973 -10.63407 -10.16162 -9.62813 -9.44851 -9.27045 -9.04676 -8.60201 -7.81761 -7.38394 -6.05966 -4.17822 1.02663 1.54627 2.75628 2.98805 3.47364 3.58107 3.87374 4.04739 4.60455 4.64946 4.76906 4.94446 5.14990 5.26892 5.35711 5.55663 5.79821 5.84021 5.95553 6.08654 6.33428 6.67048 6.72921 6.84855 7.33985 7.52098 8.02720 8.18322 8.23078 8.59098 8.93489 9.56769 11.03556 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038977 B = 0.009283 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.208223 B = 3015.518975 C = 3332.930113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.087 3.913 3 Si 0.866 3.134 4 H -0.295 1.295 5 H -0.303 1.303 6 H -0.193 1.193 7 C -0.523 4.523 8 H 0.069 0.931 9 C 0.247 3.753 10 H 0.051 0.949 11 N -0.833 5.833 12 C -0.127 4.127 13 C -0.037 4.037 14 O -0.195 6.195 15 C 0.081 3.919 16 C -0.169 4.169 17 C 0.101 3.899 18 N -0.501 5.501 19 C 0.173 3.827 20 C -0.171 4.171 21 H 0.264 0.736 22 H 0.329 0.671 23 H 0.310 0.690 24 H 0.203 0.797 25 H 0.136 0.864 26 H 0.161 0.839 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 -7.335 -0.455 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.118 4.118 3 Si 0.693 3.307 4 H -0.223 1.223 5 H -0.230 1.230 6 H -0.114 1.114 7 C -0.561 4.561 8 H 0.087 0.913 9 C 0.138 3.862 10 H 0.068 0.932 11 N -0.362 5.362 12 C -0.132 4.132 13 C -0.100 4.100 14 O -0.095 6.095 15 C 0.026 3.974 16 C -0.190 4.190 17 C -0.050 4.050 18 N -0.212 5.212 19 C 0.011 3.989 20 C -0.175 4.175 21 H 0.074 0.926 22 H 0.143 0.857 23 H 0.121 0.879 24 H 0.220 0.780 25 H 0.154 0.846 26 H 0.178 0.822 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.542 -6.758 -1.395 12.599 hybrid contribution 0.580 -0.187 1.162 1.312 sum 11.122 -6.944 -0.233 13.114 Atomic orbital electron populations 1.69947 1.06995 1.27509 1.48842 1.24980 0.94515 1.00055 0.92221 0.87201 0.84540 0.80987 0.77976 1.22276 1.23043 1.11410 1.20661 0.86946 0.94574 1.53944 0.91331 1.18075 0.96174 0.81447 0.90553 0.93169 1.60058 1.12932 1.57629 1.05604 1.22692 1.00026 1.00809 0.89683 1.23573 1.04806 0.81801 0.99861 1.83878 1.71385 1.33824 1.20438 1.19825 0.98896 0.96096 0.82582 1.20857 1.07623 0.98358 0.92117 1.22439 0.95379 0.94999 0.92183 1.67803 1.13664 1.00582 1.39152 1.22440 0.91505 0.97333 0.87589 1.20959 1.05196 0.94976 0.96376 0.92636 0.85723 0.87855 0.78023 0.84588 0.82165 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 15 3 Si 0.87 20.88 26.94 -169.99 -4.58 16.30 15 4 H -0.30 -7.25 7.11 56.52 0.40 -6.85 15 5 H -0.30 -7.58 7.11 56.52 0.40 -7.17 15 6 H -0.19 -4.22 5.17 56.52 0.29 -3.93 15 7 C -0.52 -14.12 9.29 -34.44 -0.32 -14.44 15 8 H 0.07 2.08 7.98 -52.49 -0.42 1.67 15 9 C 0.25 5.35 2.64 -70.02 -0.19 5.17 15 10 H 0.05 1.12 7.57 -51.93 -0.39 0.73 15 11 N -0.83 -15.76 5.60 -6.65 -0.04 -15.79 15 12 C -0.13 -2.50 5.39 -102.72 -0.55 -3.05 15 13 C -0.04 -0.64 11.27 29.25 0.33 -0.31 15 14 O -0.20 -3.39 10.57 4.87 0.05 -3.34 15 15 C 0.08 1.42 7.49 -38.25 -0.29 1.14 15 16 C -0.17 -2.42 10.13 -39.40 -0.40 -2.82 15 17 C 0.10 1.42 11.14 -17.53 -0.20 1.22 15 18 N -0.50 -8.48 10.35 -13.06 -0.14 -8.61 15 19 C 0.17 3.17 11.26 -17.24 -0.19 2.97 15 20 C -0.17 -3.28 6.43 -105.19 -0.68 -3.96 15 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 22 H 0.33 5.86 7.99 -39.29 -0.31 5.54 15 23 H 0.31 4.97 9.06 -39.29 -0.36 4.61 15 24 H 0.20 2.78 7.34 -52.49 -0.39 2.40 15 25 H 0.14 1.50 8.06 -52.49 -0.42 1.07 15 26 H 0.16 1.61 8.06 -52.49 -0.42 1.18 15 27 H 0.17 2.88 8.06 -52.48 -0.42 2.46 15 LS Contribution 239.74 15.07 3.61 3.61 Total: -1.00 -31.78 239.74 -5.27 -37.05 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -2.38 Total: 8.96 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -2.58 Total: -11.73 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.60 Total: -50.85 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.05 Total: -3.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.58 Total: 16.30 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.78 -5.27 -37.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.902 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds