Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47032 * 300.00060 * 3 2 1 6 6 H 1.48495 * 109.47085 * 60.00285 * 3 2 1 7 7 C 1.37873 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00758 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99623 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47026 * 60.00200 * 9 7 2 11 11 N 1.46901 * 109.47294 * 300.00059 * 9 7 2 12 12 C 1.50705 * 109.46981 * 180.02562 * 9 7 2 13 13 C 1.34034 * 126.91402 * 100.02619 * 12 9 7 14 14 O 1.34542 * 110.18183 * 179.97438 * 13 12 9 15 15 C 1.34373 * 110.89216 * 0.02562 * 14 13 12 16 16 C 1.39153 * 134.63374 * 180.02562 * 15 14 13 17 17 C 1.37805 * 118.91699 * 179.97438 * 16 15 14 18 18 N 1.32242 * 121.51791 * 0.02562 * 17 16 15 19 19 C 1.31767 * 122.11796 * 359.97438 * 18 17 16 20 20 C 1.39142 * 120.08803 * 0.02562 * 19 18 17 21 21 H 0.97001 * 119.99875 * 359.97438 * 1 2 3 22 22 H 1.00895 * 110.99851 * 300.00396 * 11 9 7 23 23 H 1.00898 * 110.99612 * 63.95074 * 11 9 7 24 24 H 1.08008 * 124.91146 * 359.97438 * 13 12 9 25 25 H 1.08000 * 120.54324 * 359.97438 * 16 15 14 26 26 H 1.08005 * 119.23975 * 179.72038 * 17 16 15 27 27 H 1.07997 * 119.96086 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2303 -3.6446 -0.0005 13 6 2.6116 -4.3777 1.0548 14 8 3.4998 -5.3136 0.6732 15 6 3.7406 -5.2359 -0.6465 16 6 4.5474 -5.9388 -1.5361 17 6 4.5466 -5.5763 -2.8656 18 7 3.7995 -4.5796 -3.3099 19 6 3.0175 -3.8807 -2.5123 20 6 2.9584 -4.1807 -1.1549 21 1 -0.4850 0.8401 0.0004 22 1 0.9652 -2.5259 2.0380 23 1 -0.3004 -1.8577 1.1911 24 1 2.2572 -4.2375 2.0653 25 1 5.1641 -6.7552 -1.1902 26 1 5.1743 -6.1154 -3.5598 27 1 2.4216 -3.0738 -2.9126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074986.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = 13.636740 kcal Electronic energy + Delta-G solvation = -14093.427675 eV Core-core repulsion = 11623.581283 eV Total energy + Delta-G solvation = -2469.846392 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.51385 -39.84126 -37.13379 -34.10723 -32.58004 -32.48667 -30.12171 -28.11909 -25.15605 -24.55624 -23.84716 -20.92842 -18.70254 -18.61802 -18.18973 -17.12056 -16.97311 -16.51281 -15.72059 -15.38105 -15.18307 -14.82359 -14.36309 -14.33995 -13.74266 -13.24320 -12.89094 -12.79676 -12.28470 -12.04883 -11.82221 -11.02706 -10.69551 -10.66493 -10.33353 -9.32013 -9.07747 -8.15809 -6.41295 -0.17675 0.29297 1.34419 1.37539 1.46203 1.53593 1.78110 2.35752 2.81826 3.01451 3.44845 3.53672 3.74330 4.08197 4.15080 4.40920 4.47655 4.72115 4.81923 4.89219 5.14141 5.29297 5.53654 5.61353 5.64435 5.99054 6.11483 6.60331 6.85804 6.97155 7.07738 7.35377 8.79010 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.034265 B = 0.009256 C = 0.008146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.973835 B = 3024.346738 C = 3436.562800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.041 0.959 9 C 0.277 3.723 10 H 0.014 0.986 11 N -0.841 5.841 12 C -0.137 4.137 13 C -0.009 4.009 14 O -0.194 6.194 15 C 0.064 3.936 16 C -0.153 4.153 17 C 0.101 3.899 18 N -0.511 5.511 19 C 0.149 3.851 20 C -0.198 4.198 21 H 0.269 0.731 22 H 0.321 0.679 23 H 0.350 0.650 24 H 0.232 0.768 25 H 0.179 0.821 26 H 0.208 0.792 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -8.862 -0.342 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.173 4.173 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.060 0.940 9 C 0.167 3.833 10 H 0.032 0.968 11 N -0.370 5.370 12 C -0.140 4.140 13 C -0.072 4.072 14 O -0.095 6.095 15 C 0.009 3.991 16 C -0.173 4.173 17 C -0.050 4.050 18 N -0.223 5.223 19 C -0.013 4.013 20 C -0.201 4.201 21 H 0.079 0.921 22 H 0.131 0.869 23 H 0.165 0.835 24 H 0.248 0.752 25 H 0.196 0.804 26 H 0.225 0.775 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.070 -9.505 -1.315 11.919 hybrid contribution 0.284 2.124 1.038 2.381 sum 7.354 -7.381 -0.278 10.423 Atomic orbital electron populations 1.69821 1.06769 1.28088 1.50508 1.25657 0.95697 1.02068 0.93866 0.85534 0.78614 0.79662 0.77950 1.20178 1.20477 1.19985 1.21942 0.93070 0.92223 1.52394 0.94020 1.17094 0.87954 0.87410 0.90892 0.96825 1.59418 1.18046 1.55635 1.03871 1.21594 1.01232 0.99747 0.91429 1.24028 0.92715 0.89656 1.00771 1.83895 1.53625 1.50245 1.21695 1.20290 0.98425 0.97036 0.83301 1.21376 1.01159 1.02999 0.91774 1.23244 0.95667 0.92843 0.93225 1.67800 1.07742 1.08049 1.38667 1.22297 0.94401 0.96678 0.87875 1.21097 1.02214 0.99989 0.96827 0.92116 0.86920 0.83472 0.75181 0.80398 0.77506 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.32 11.54 21.45 0.25 -49.07 15 2 C 0.03 1.47 5.38 84.65 0.46 1.93 15 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 15 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.56 -29.79 8.71 25.60 0.22 -29.56 15 8 H 0.04 2.30 7.74 -2.91 -0.02 2.28 15 9 C 0.28 13.80 3.24 43.43 0.14 13.94 15 10 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 11 N -0.84 -38.42 8.89 -174.94 -1.56 -39.98 15 12 C -0.14 -6.00 5.44 -18.63 -0.10 -6.10 15 13 C -0.01 -0.32 11.23 66.86 0.75 0.43 15 14 O -0.19 -6.87 10.57 -5.51 -0.06 -6.92 15 15 C 0.06 2.28 7.49 23.13 0.17 2.45 15 16 C -0.15 -4.04 10.13 22.39 0.23 -3.82 15 17 C 0.10 2.62 11.14 84.53 0.94 3.56 15 18 N -0.51 -17.42 10.35 -195.23 -2.02 -19.44 15 19 C 0.15 5.86 11.26 84.92 0.96 6.81 15 20 C -0.20 -8.14 6.43 -20.23 -0.13 -8.27 15 21 H 0.27 13.80 8.31 -92.71 -0.77 13.03 15 22 H 0.32 13.35 8.03 -89.70 -0.72 12.63 15 23 H 0.35 17.32 7.08 -89.70 -0.63 16.69 15 24 H 0.23 7.05 7.34 -2.91 -0.02 7.03 15 25 H 0.18 3.15 8.06 -2.91 -0.02 3.12 15 26 H 0.21 3.27 8.06 -2.91 -0.02 3.25 15 27 H 0.15 6.06 8.06 -2.91 -0.02 6.04 15 Total: -1.00 -61.11 243.46 2.14 -58.97 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.14 Total: 30.60 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 3.64 Total: -18.62 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -3.33 Total: -108.49 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.06 Total: -6.92 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -61.11 2.14 -58.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074986.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.605 kcal (2) G-P(sol) polarization free energy of solvation -61.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds