Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35775 * 117.00470 * 2 1 4 4 C 1.39004 * 120.88227 * 359.97438 * 3 2 1 5 5 C 1.38359 * 119.54614 * 180.02562 * 4 3 2 6 6 N 1.31724 * 121.20119 * 359.97438 * 5 4 3 7 7 C 1.32772 * 121.59153 * 0.02562 * 6 5 4 8 8 C 1.47735 * 133.47808 * 179.67761 * 7 6 5 9 9 C 1.40960 * 126.88944 * 0.26546 * 8 7 6 10 10 H 1.08002 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.39751 * 120.00244 * 179.97438 * 9 8 7 12 12 N 1.31046 * 119.99928 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00110 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47054 * 89.99929 * 13 11 9 15 15 H 1.48497 * 109.47068 * 210.00157 * 13 11 9 16 16 H 1.48502 * 109.47089 * 329.99903 * 13 11 9 17 17 C 1.38909 * 106.22856 * 179.97438 * 8 7 6 18 18 N 1.35507 * 109.25436 * 0.36470 * 17 8 7 19 19 H 0.97002 * 124.73374 * 179.75340 * 18 17 8 20 20 C 1.38128 * 110.52441 * 359.76408 * 18 17 8 21 21 H 1.08998 * 109.47634 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47550 * 300.00625 * 1 2 3 23 23 H 1.09006 * 109.46644 * 59.99780 * 1 2 3 24 24 H 1.08001 * 120.23100 * 0.04449 * 4 3 2 25 25 H 1.07996 * 119.39891 * 180.02562 * 5 4 3 26 26 H 0.97000 * 120.00298 * 179.97438 * 12 11 9 27 27 H 1.07995 * 125.36934 * 180.13171 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.3065 2.3871 -0.0005 5 6 1.9633 3.6048 -0.0011 6 7 3.2789 3.6706 -0.0006 7 6 4.0300 2.5757 0.0000 8 6 5.4891 2.3439 -0.0055 9 6 6.5016 3.3246 -0.0079 10 1 6.2388 4.3722 -0.0061 11 6 7.8456 2.9414 -0.0125 12 7 8.1645 1.6704 -0.0151 13 14 9.1874 4.2410 -0.0150 14 1 9.5472 4.5836 1.3844 15 1 10.3843 3.7154 -0.7194 16 1 8.6972 5.4573 -0.7119 17 6 5.6633 0.9658 -0.0009 18 7 4.4501 0.3621 -0.0015 19 1 4.3105 -0.5978 -0.0023 20 6 3.4402 1.3044 -0.0011 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.2271 2.3516 -0.0002 25 1 1.3869 4.5181 -0.0011 26 1 9.0973 1.4043 -0.0187 27 1 6.6153 0.4560 -0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260121584.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = 0.428229 kcal Electronic energy + Delta-G solvation = -14019.010004 eV Core-core repulsion = 11548.590848 eV Total energy + Delta-G solvation = -2470.419156 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97181 -39.72108 -37.94703 -35.46741 -32.41056 -30.74665 -30.14835 -28.13199 -26.76031 -24.00128 -22.84834 -21.50373 -19.62855 -18.29341 -17.86505 -17.25484 -16.74162 -16.40477 -15.80711 -15.23687 -15.09280 -14.81875 -14.37858 -13.69550 -13.25073 -13.10128 -12.87114 -12.72759 -12.39584 -12.25403 -11.90035 -11.75422 -11.25440 -10.09642 -10.08078 -8.93851 -8.70702 -8.42829 -6.00637 0.39341 0.72219 1.41937 1.44016 1.57803 2.20426 2.29807 2.34992 2.66796 3.05742 3.62689 3.81973 4.06612 4.12778 4.44262 4.46054 4.55761 4.71171 4.83670 4.95779 5.19188 5.29082 5.44038 5.76412 6.03135 6.16170 6.49955 6.61367 7.02706 7.11486 7.24714 7.58401 8.56749 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054799 B = 0.008043 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.838037 B = 3480.238423 C = 3975.928043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.139 3.861 4 C -0.253 4.253 5 C 0.080 3.920 6 N -0.499 5.499 7 C 0.045 3.955 8 C -0.017 4.017 9 C -0.446 4.446 10 H 0.061 0.939 11 C 0.015 3.985 12 N -0.856 5.856 13 Si 0.991 3.009 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.268 1.268 17 C -0.075 4.075 18 N -0.567 5.567 19 H 0.414 0.586 20 C -0.002 4.002 21 H 0.122 0.878 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.174 0.826 25 H 0.181 0.819 26 H 0.283 0.717 27 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -3.279 0.019 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.083 3.917 4 C -0.275 4.275 5 C -0.090 4.090 6 N -0.210 5.210 7 C -0.088 4.088 8 C -0.024 4.024 9 C -0.479 4.479 10 H 0.079 0.921 11 C -0.193 4.193 12 N -0.487 5.487 13 Si 0.813 3.187 14 H -0.192 1.192 15 H -0.190 1.190 16 H -0.193 1.193 17 C -0.203 4.203 18 N -0.169 5.169 19 H 0.251 0.749 20 C -0.115 4.115 21 H 0.140 0.860 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.191 0.809 25 H 0.198 0.802 26 H 0.094 0.906 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.169 -2.991 0.014 10.600 hybrid contribution 0.014 -0.653 0.006 0.654 sum -10.156 -3.644 0.020 10.790 Atomic orbital electron populations 1.23378 0.75829 1.05650 1.02604 1.85957 1.24101 1.25971 1.88913 1.18418 0.87838 0.86267 0.99136 1.21982 1.01755 0.91135 1.12626 1.22768 0.88846 0.98299 0.99050 1.66860 1.07695 1.32265 1.14200 1.20377 0.95035 0.86941 1.06482 1.18402 0.87756 0.93015 1.03183 1.18936 0.90740 0.93353 1.44830 0.92101 1.26484 1.01102 0.98353 0.93341 1.69428 1.20105 1.17342 1.41813 0.85049 0.76601 0.78039 0.79017 1.19182 1.19028 1.19292 1.23335 0.87640 0.92766 1.16565 1.41180 1.04061 1.07287 1.64413 0.74883 1.18705 0.88376 0.91804 1.12656 0.86003 0.91422 0.91434 0.80887 0.80170 0.90630 0.78912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.84 113.37 1.12 1.48 15 2 O -0.34 -10.71 10.52 -91.03 -0.96 -11.67 15 3 C 0.14 5.37 6.75 22.83 0.15 5.52 15 4 C -0.25 -8.39 9.10 22.48 0.20 -8.18 15 5 C 0.08 3.03 11.16 84.74 0.95 3.97 15 6 N -0.50 -24.96 10.40 -184.66 -1.92 -26.88 15 7 C 0.05 2.46 7.48 41.98 0.31 2.77 15 8 C -0.02 -1.03 6.11 -19.94 -0.12 -1.15 15 9 C -0.45 -26.46 9.42 23.30 0.22 -26.24 15 10 H 0.06 3.66 7.84 -2.91 -0.02 3.64 15 11 C 0.01 0.78 5.49 85.18 0.47 1.25 15 12 N -0.86 -45.63 10.33 21.80 0.23 -45.41 15 13 Si 0.99 41.74 29.56 68.60 2.03 43.77 15 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 15 15 H -0.27 -10.43 7.11 99.48 0.71 -9.73 15 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 17 C -0.08 -4.02 10.88 84.29 0.92 -3.10 15 18 N -0.57 -26.20 5.99 -184.69 -1.11 -27.31 15 19 H 0.41 15.89 8.96 -92.71 -0.83 15.06 15 20 C 0.00 -0.11 7.22 38.99 0.28 0.17 15 21 H 0.12 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.07 1.12 7.71 -2.39 -0.02 1.10 15 23 H 0.07 1.11 7.71 -2.38 -0.02 1.10 15 24 H 0.17 3.92 6.44 -2.91 -0.02 3.91 15 25 H 0.18 5.18 8.06 -2.91 -0.02 5.16 15 26 H 0.28 13.66 8.30 -92.71 -0.77 12.89 15 27 H 0.19 10.42 5.67 -2.91 -0.02 10.40 15 Total: -1.00 -69.81 240.40 3.15 -66.66 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.38 Total: 24.35 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.50 Total: -23.51 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -2.80 Total: -99.60 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.96 Total: -11.67 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -69.81 3.15 -66.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260121584.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.092 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds