Wall clock time and date at job start Mon Mar 30 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30476 * 126.06208 * 2 1 4 4 N 1.39866 * 110.09331 * 180.11798 * 3 2 1 5 5 C 1.36967 * 125.50265 * 179.84260 * 4 3 2 6 6 H 1.08002 * 120.00555 * 179.70084 * 5 4 3 7 7 C 1.38920 * 119.99691 * 359.42058 * 5 4 3 8 8 N 1.31384 * 120.00059 * 0.27529 * 7 5 4 9 9 Si 1.86803 * 119.99989 * 180.27682 * 7 5 4 10 10 H 1.48490 * 109.47019 * 60.00033 * 9 7 5 11 11 H 1.48504 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00000 * 9 7 5 13 13 C 1.37786 * 109.00123 * 359.58211 * 4 3 2 14 14 C 1.39046 * 133.64867 * 180.26070 * 13 4 3 15 15 C 1.37723 * 119.96713 * 179.97438 * 14 13 4 16 16 C 1.39294 * 120.59986 * 359.97438 * 15 14 13 17 17 O 1.35956 * 119.83059 * 179.97438 * 16 15 14 18 18 C 1.38092 * 120.34410 * 0.02562 * 16 15 14 19 19 C 1.39843 * 119.60613 * 359.97438 * 18 16 15 20 20 H 1.09006 * 109.46794 * 270.34409 * 1 2 3 21 21 H 1.09001 * 109.47322 * 30.33875 * 1 2 3 22 22 H 1.09003 * 109.47286 * 150.34157 * 1 2 3 23 23 H 0.96991 * 119.99809 * 179.97438 * 8 7 5 24 24 H 1.07997 * 120.01671 * 359.95011 * 14 13 4 25 25 H 1.08007 * 119.70001 * 179.97438 * 15 14 13 26 26 H 0.96705 * 114.00118 * 90.00039 * 17 16 15 27 27 H 1.07996 * 120.19904 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0547 0.0000 4 7 3.6198 0.6700 -0.0027 5 6 4.6912 1.5231 -0.0065 6 1 5.6963 1.1279 -0.0035 7 6 4.4851 2.8969 -0.0201 8 7 3.2625 3.3777 -0.0239 9 14 5.9464 4.0605 -0.0332 10 1 6.7686 3.8090 -1.2439 11 1 5.4615 5.4641 -0.0462 12 1 6.7708 3.8334 1.1810 13 6 3.6927 -0.7060 0.0050 14 6 4.7482 -1.6111 0.0110 15 6 4.4937 -2.9646 0.0188 16 6 3.1843 -3.4399 0.0214 17 8 2.9511 -4.7793 0.0286 18 6 2.1219 -2.5577 0.0156 19 6 2.3671 -1.1810 0.0076 20 1 -0.3633 0.0062 1.0277 21 1 -0.3634 0.8869 -0.5191 22 1 -0.3634 -0.8930 -0.5085 23 1 3.1186 4.3369 -0.0331 24 1 5.7670 -1.2529 0.0090 25 1 5.3168 -3.6638 0.0230 26 1 2.8836 -5.1620 0.9141 27 1 1.1077 -2.9288 0.0180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260138523.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:51 Heat of formation + Delta-G solvation = 18.923431 kcal Electronic energy + Delta-G solvation = -14060.899356 eV Core-core repulsion = 11591.282213 eV Total energy + Delta-G solvation = -2469.617144 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.74043 -39.21815 -36.27109 -35.53473 -33.54269 -30.86252 -29.63631 -29.41703 -26.03642 -23.71531 -22.64237 -21.15223 -19.41105 -18.90789 -17.47763 -16.80792 -16.25635 -16.11725 -15.70375 -15.19223 -14.78388 -14.04747 -13.83091 -13.76729 -13.39232 -13.24774 -12.91733 -12.69342 -12.42204 -12.18633 -12.10671 -11.35495 -11.18251 -10.79349 -10.51905 -9.27810 -8.81052 -8.49205 -6.11096 0.27950 0.71739 1.35357 1.44037 1.50679 2.00535 2.06068 2.56384 2.80492 3.14529 3.53750 4.00864 4.05785 4.15350 4.39115 4.67740 4.85143 4.86862 4.89940 4.98563 5.14013 5.26046 5.28614 5.53999 5.66485 5.83277 6.02687 6.15868 6.66626 7.10931 7.36394 7.54570 8.50938 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037224 B = 0.009453 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.024708 B = 2961.225978 C = 3695.566926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.024 4.024 3 N -0.250 5.250 4 N -0.212 5.212 5 C -0.353 4.353 6 H 0.127 0.873 7 C -0.006 4.006 8 N -0.831 5.831 9 Si 1.014 2.986 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.256 1.256 13 C 0.015 3.985 14 C -0.119 4.119 15 C -0.116 4.116 16 C 0.036 3.964 17 O -0.501 6.501 18 C -0.072 4.072 19 C -0.199 4.199 20 H 0.078 0.922 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.276 0.724 24 H 0.125 0.875 25 H 0.152 0.848 26 H 0.399 0.601 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.425 -8.055 1.760 8.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.190 4.190 3 N -0.072 5.072 4 N 0.017 4.983 5 C -0.483 4.483 6 H 0.144 0.856 7 C -0.216 4.216 8 N -0.460 5.460 9 Si 0.833 3.167 10 H -0.182 1.182 11 H -0.197 1.197 12 H -0.180 1.180 13 C -0.106 4.106 14 C -0.141 4.141 15 C -0.138 4.138 16 C -0.010 4.010 17 O -0.312 6.312 18 C -0.093 4.093 19 C -0.210 4.210 20 H 0.097 0.903 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.086 0.914 24 H 0.143 0.857 25 H 0.170 0.830 26 H 0.255 0.745 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.374 -6.392 1.145 6.505 hybrid contribution 0.528 -0.009 0.480 0.713 sum 0.901 -6.401 1.625 6.665 Atomic orbital electron populations 1.19992 0.84451 1.03101 1.02888 1.24233 0.98136 0.89097 1.07538 1.77414 0.87193 1.22427 1.20209 1.44726 1.03805 1.01982 1.47763 1.20293 0.85811 0.88182 1.54029 0.85575 1.26690 1.01263 0.99041 0.94599 1.70355 1.22404 1.14490 1.38754 0.84719 0.76026 0.75897 0.80027 1.18173 1.19746 1.18047 1.19457 0.97004 0.85079 1.09043 1.19970 0.96595 0.91851 1.05697 1.21155 0.97065 0.93841 1.01712 1.17896 0.91479 0.83139 1.08501 1.84807 1.94122 1.17517 1.34726 1.20769 0.99654 0.89610 0.99229 1.19627 0.91636 0.94232 1.15457 0.90323 0.91878 0.89014 0.91415 0.85747 0.83049 0.74464 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.65 10.48 71.24 0.75 -0.90 15 2 C -0.02 -1.16 7.44 44.80 0.33 -0.83 15 3 N -0.25 -14.43 10.18 -43.47 -0.44 -14.88 15 4 N -0.21 -12.16 3.74 -183.92 -0.69 -12.85 15 5 C -0.35 -19.60 10.14 84.05 0.85 -18.75 15 6 H 0.13 6.35 7.76 -2.91 -0.02 6.32 15 7 C -0.01 -0.32 5.50 84.92 0.47 0.15 15 8 N -0.83 -47.54 11.76 21.65 0.25 -47.29 15 9 Si 1.01 39.76 29.55 68.60 2.03 41.79 15 10 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 12 H -0.26 -9.49 7.11 99.48 0.71 -8.79 15 13 C 0.01 0.74 6.81 39.03 0.27 1.01 15 14 C -0.12 -5.01 9.96 22.34 0.22 -4.78 15 15 C -0.12 -4.06 9.95 22.40 0.22 -3.84 15 16 C 0.04 1.25 6.69 22.49 0.15 1.40 15 17 O -0.50 -13.77 13.49 -93.05 -1.26 -15.03 15 18 C -0.07 -2.72 10.04 22.62 0.23 -2.50 15 19 C -0.20 -9.33 6.32 -20.22 -0.13 -9.46 15 20 H 0.08 2.52 8.14 -2.38 -0.02 2.50 15 21 H 0.06 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.28 14.52 8.31 -92.71 -0.77 13.75 15 24 H 0.12 4.80 7.99 -2.91 -0.02 4.78 15 25 H 0.15 4.16 8.06 -2.91 -0.02 4.14 15 26 H 0.40 6.71 9.06 -74.05 -0.67 6.04 15 27 H 0.14 4.44 8.06 -2.91 -0.02 4.41 15 Total: -1.00 -71.02 247.04 3.78 -67.24 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.53 Total: 19.51 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.36 Total: -38.50 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -0.88 Total: -75.01 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.26 Total: -15.03 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -71.02 3.78 -67.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260138523.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.162 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds