Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38061 * 120.04777 * 2 1 4 4 C 1.38646 * 120.47950 * 179.76412 * 3 2 1 5 5 C 1.37765 * 120.40237 * 0.51872 * 4 3 2 6 6 C 1.39609 * 119.73013 * 359.74556 * 5 4 3 7 7 N 1.35941 * 133.68227 * 180.02562 * 6 5 4 8 8 C 1.30923 * 108.73305 * 179.97438 * 7 6 5 9 9 N 1.37603 * 124.97125 * 179.97438 * 8 7 6 10 10 C 1.36970 * 119.99468 * 0.02562 * 9 8 7 11 11 H 1.07996 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.38809 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31543 * 120.00044 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99999 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47160 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47476 * 119.99966 * 14 12 10 17 17 H 1.48503 * 109.47137 * 239.99962 * 14 12 10 18 18 O 1.34534 * 110.06515 * 359.97438 * 8 7 6 19 19 C 1.35247 * 108.16036 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47152 * 269.71854 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71954 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71935 * 1 2 3 23 23 H 1.08002 * 119.76221 * 0.02562 * 3 2 1 24 24 H 1.07996 * 119.79574 * 180.25969 * 4 3 2 25 25 H 1.08004 * 120.13365 * 179.71844 * 5 4 3 26 26 H 0.96997 * 120.00587 * 180.02562 * 9 8 7 27 27 H 0.97002 * 120.00579 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1951 0.0000 4 6 3.5847 1.2055 0.0049 5 6 4.2909 0.0226 -0.0009 6 6 3.6048 -1.1932 -0.0064 7 7 3.9996 -2.4940 -0.0122 8 6 2.9353 -3.2565 -0.0152 9 7 2.9508 -4.6324 -0.0217 10 6 4.1447 -5.3037 -0.0251 11 1 5.0738 -4.7532 -0.0222 12 6 4.1604 -6.6917 -0.0322 13 7 3.0287 -7.3623 -0.0352 14 14 5.7885 -7.6073 -0.0361 15 1 6.9063 -6.6296 -0.0299 16 1 5.8764 -8.4663 1.1721 17 1 5.8775 -8.4539 -1.2529 18 8 1.8242 -2.4980 -0.0109 19 6 2.2005 -1.1990 -0.0044 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6552 2.1286 0.0004 24 1 4.1143 2.1467 0.0091 25 1 5.3709 0.0359 -0.0016 26 1 2.1164 -5.1269 -0.0239 27 1 3.0396 -8.3322 -0.0405 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260146159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = 35.354936 kcal Electronic energy + Delta-G solvation = -13821.862196 eV Core-core repulsion = 11352.957576 eV Total energy + Delta-G solvation = -2468.904620 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.01066 -37.52119 -35.68133 -33.71393 -31.92539 -31.40716 -28.09391 -26.43455 -25.15628 -22.25265 -21.39645 -20.09360 -18.25324 -17.20899 -16.76968 -15.83193 -15.47069 -14.68057 -14.18992 -13.81336 -13.20902 -13.04349 -12.95157 -12.01548 -11.80402 -11.71795 -11.47856 -11.38976 -10.97516 -10.75830 -10.57610 -10.45750 -9.80400 -9.08426 -8.76032 -7.94138 -7.00646 -6.75456 -4.03107 1.60454 1.97375 2.98944 3.03547 3.15052 3.28257 3.53744 4.03740 4.43237 4.60773 4.95526 5.17343 5.29115 5.64613 5.75149 5.81656 5.85983 5.88982 6.12883 6.25652 6.54271 6.82883 6.98696 7.04854 7.07452 7.28294 7.44487 7.59694 8.37243 8.74449 8.95272 9.42911 10.40976 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054273 B = 0.007065 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.783968 B = 3962.033477 C = 4462.672271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.044 4.044 3 C -0.163 4.163 4 C -0.102 4.102 5 C -0.128 4.128 6 C 0.107 3.893 7 N -0.581 5.581 8 C 0.456 3.544 9 N -0.488 5.488 10 C -0.286 4.286 11 H 0.119 0.881 12 C 0.024 3.976 13 N -0.888 5.888 14 Si 0.946 3.054 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.277 1.277 18 O -0.255 6.255 19 C -0.037 4.037 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.122 0.878 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.413 0.587 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 9.650 0.052 9.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.046 4.046 3 C -0.184 4.184 4 C -0.121 4.121 5 C -0.150 4.150 6 C -0.011 4.011 7 N -0.327 5.327 8 C 0.156 3.844 9 N -0.112 5.112 10 C -0.415 4.415 11 H 0.136 0.864 12 C -0.181 4.181 13 N -0.526 5.526 14 Si 0.771 3.229 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 O -0.150 6.150 19 C -0.088 4.088 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.140 0.860 24 H 0.138 0.862 25 H 0.139 0.861 26 H 0.251 0.749 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.424 8.943 0.048 9.056 hybrid contribution -0.487 -0.660 0.004 0.820 sum -1.911 8.283 0.052 8.501 Atomic orbital electron populations 1.20705 0.91532 1.02358 1.02011 1.18476 0.95177 0.88455 1.02461 1.20379 0.93970 0.95520 1.08513 1.20709 0.93840 0.96977 1.00609 1.19956 0.99325 0.88978 1.06748 1.19903 0.90640 0.92729 0.97851 1.71077 1.24863 0.98516 1.38234 1.21650 0.78823 0.87224 0.96700 1.39731 1.11094 0.95716 1.64628 1.19965 0.84760 0.88864 1.47886 0.86376 1.25435 0.99824 0.96243 0.96567 1.69678 1.26191 1.09068 1.47643 0.85533 0.80190 0.79087 0.78050 1.18665 1.20318 1.20311 1.84297 1.34952 1.15493 1.80285 1.19684 0.94976 0.82543 1.11641 0.91537 0.91836 0.91648 0.86022 0.86203 0.86122 0.74939 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.02 36.01 0.36 -1.17 15 2 C -0.04 -0.78 5.88 -104.59 -0.62 -1.39 15 3 C -0.16 -2.49 9.68 -39.50 -0.38 -2.87 15 4 C -0.10 -1.57 10.02 -39.60 -0.40 -1.97 15 5 C -0.13 -2.38 10.10 -39.24 -0.40 -2.78 15 6 C 0.11 2.43 7.23 -84.71 -0.61 1.81 15 7 N -0.58 -14.76 10.55 -12.10 -0.13 -14.89 15 8 C 0.46 11.44 8.91 -87.63 -0.78 10.66 15 9 N -0.49 -12.42 5.39 -12.90 -0.07 -12.49 15 10 C -0.29 -7.51 9.78 -15.04 -0.15 -7.65 15 11 H 0.12 3.17 7.32 -52.49 -0.38 2.79 15 12 C 0.02 0.60 5.50 -17.46 -0.10 0.50 15 13 N -0.89 -22.94 13.05 55.49 0.72 -22.21 15 14 Si 0.95 19.71 29.55 -169.99 -5.02 14.69 15 15 H -0.26 -5.44 7.11 56.52 0.40 -5.04 15 16 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 18 O -0.26 -5.97 10.79 2.40 0.03 -5.94 15 19 C -0.04 -0.80 7.08 -38.66 -0.27 -1.07 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.06 0.94 8.09 -51.93 -0.42 0.52 15 22 H 0.06 0.74 8.08 -51.93 -0.42 0.32 15 23 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 24 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 25 H 0.12 2.06 8.06 -52.48 -0.42 1.63 15 26 H 0.41 10.23 8.01 -40.82 -0.33 9.90 15 27 H 0.28 6.74 8.31 -40.82 -0.34 6.40 15 LS Contribution 247.00 15.07 3.72 3.72 Total: -1.00 -28.23 247.00 -6.47 -34.70 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.38 Total: 8.36 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.34 Total: -5.93 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.53 Total: -49.59 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: 0.03 Total: -5.94 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.23 -6.47 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.055 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds