Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38061 * 120.04777 * 2 1 4 4 C 1.38646 * 120.47950 * 179.76412 * 3 2 1 5 5 C 1.37765 * 120.40237 * 0.51872 * 4 3 2 6 6 C 1.39609 * 119.73013 * 359.74556 * 5 4 3 7 7 N 1.35941 * 133.68227 * 180.02562 * 6 5 4 8 8 C 1.30923 * 108.73305 * 179.97438 * 7 6 5 9 9 N 1.37603 * 124.97125 * 179.97438 * 8 7 6 10 10 C 1.36970 * 119.99468 * 0.02562 * 9 8 7 11 11 H 1.07996 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.38809 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31543 * 120.00044 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 119.99999 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47160 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47476 * 119.99966 * 14 12 10 17 17 H 1.48503 * 109.47137 * 239.99962 * 14 12 10 18 18 O 1.34534 * 110.06515 * 359.97438 * 8 7 6 19 19 C 1.35247 * 108.16036 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47152 * 269.71854 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.71954 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.71935 * 1 2 3 23 23 H 1.08002 * 119.76221 * 0.02562 * 3 2 1 24 24 H 1.07996 * 119.79574 * 180.25969 * 4 3 2 25 25 H 1.08004 * 120.13365 * 179.71844 * 5 4 3 26 26 H 0.96997 * 120.00587 * 180.02562 * 9 8 7 27 27 H 0.97002 * 120.00579 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1951 0.0000 4 6 3.5847 1.2055 0.0049 5 6 4.2909 0.0226 -0.0009 6 6 3.6048 -1.1932 -0.0064 7 7 3.9996 -2.4940 -0.0122 8 6 2.9353 -3.2565 -0.0152 9 7 2.9508 -4.6324 -0.0217 10 6 4.1447 -5.3037 -0.0251 11 1 5.0738 -4.7532 -0.0222 12 6 4.1604 -6.6917 -0.0322 13 7 3.0287 -7.3623 -0.0352 14 14 5.7885 -7.6073 -0.0361 15 1 6.9063 -6.6296 -0.0299 16 1 5.8764 -8.4663 1.1721 17 1 5.8775 -8.4539 -1.2529 18 8 1.8242 -2.4980 -0.0109 19 6 2.2005 -1.1990 -0.0044 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6552 2.1286 0.0004 24 1 4.1143 2.1467 0.0091 25 1 5.3709 0.0359 -0.0016 26 1 2.1164 -5.1269 -0.0239 27 1 3.0396 -8.3322 -0.0405 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260146159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = 15.935402 kcal Electronic energy + Delta-G solvation = -13822.704290 eV Core-core repulsion = 11352.957576 eV Total energy + Delta-G solvation = -2469.746714 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.72488 -39.00735 -37.49568 -35.37874 -33.74838 -32.84966 -29.70499 -27.74988 -27.00405 -23.81215 -23.09463 -21.68424 -20.04430 -18.94394 -18.40485 -17.60655 -17.05470 -16.32579 -15.78683 -15.47744 -14.52503 -14.42658 -14.36757 -13.61227 -13.45212 -13.19944 -12.99503 -12.70893 -12.62292 -12.59833 -12.10114 -12.05644 -11.45333 -10.86478 -10.52827 -9.39367 -8.70347 -8.62466 -5.99932 0.10906 0.49163 1.26475 1.39578 1.46965 1.63452 1.84015 2.31642 2.89111 2.90450 3.06158 3.76824 4.05813 4.24101 4.37623 4.47122 4.55715 4.78189 4.87358 4.97945 5.06727 5.26621 5.41396 5.53105 5.59583 5.62969 5.75839 6.03917 6.52727 6.88766 7.05973 7.57963 8.55852 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054273 B = 0.007065 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.783968 B = 3962.033477 C = 4462.672271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.054 4.054 3 C -0.137 4.137 4 C -0.087 4.087 5 C -0.135 4.135 6 C 0.057 3.943 7 N -0.609 5.609 8 C 0.448 3.552 9 N -0.508 5.508 10 C -0.312 4.312 11 H 0.102 0.898 12 C -0.014 4.014 13 N -0.919 5.919 14 Si 1.012 2.988 15 H -0.265 1.265 16 H -0.269 1.269 17 H -0.269 1.269 18 O -0.263 6.263 19 C -0.069 4.069 20 H 0.079 0.921 21 H 0.047 0.953 22 H 0.102 0.898 23 H 0.174 0.826 24 H 0.170 0.830 25 H 0.130 0.870 26 H 0.411 0.589 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 12.828 0.072 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.156 4.156 4 C -0.105 4.105 5 C -0.157 4.157 6 C -0.058 4.058 7 N -0.357 5.357 8 C 0.148 3.852 9 N -0.134 5.134 10 C -0.441 4.441 11 H 0.120 0.880 12 C -0.215 4.215 13 N -0.558 5.558 14 Si 0.834 3.166 15 H -0.189 1.189 16 H -0.194 1.194 17 H -0.194 1.194 18 O -0.158 6.158 19 C -0.120 4.120 20 H 0.097 0.903 21 H 0.066 0.934 22 H 0.121 0.879 23 H 0.191 0.809 24 H 0.188 0.812 25 H 0.148 0.852 26 H 0.247 0.753 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.548 12.221 0.069 12.319 hybrid contribution -0.531 -1.181 0.001 1.294 sum -2.079 11.041 0.069 11.235 Atomic orbital electron populations 1.20780 0.89003 1.03482 1.03146 1.19161 0.97329 0.87579 1.01403 1.21111 0.94211 0.96372 1.03925 1.21316 0.94280 0.97495 0.97447 1.20395 1.00279 0.88789 1.06198 1.20401 0.91895 0.92761 1.00759 1.70971 1.25773 1.00407 1.38527 1.21817 0.79475 0.87365 0.96543 1.39620 1.10692 0.95803 1.67327 1.19948 0.84588 0.89543 1.49982 0.87993 1.26287 1.03169 0.96290 0.95735 1.69754 1.27850 1.09441 1.48748 0.84586 0.75958 0.77635 0.78436 1.18855 1.19426 1.19413 1.84258 1.34616 1.16632 1.80254 1.20391 0.95397 0.82757 1.13414 0.90268 0.93414 0.87902 0.80856 0.81239 0.85159 0.75288 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 10.02 71.24 0.71 -1.95 15 2 C -0.05 -1.72 5.88 -19.84 -0.12 -1.84 15 3 C -0.14 -3.39 9.68 22.33 0.22 -3.17 15 4 C -0.09 -2.23 10.02 22.26 0.22 -2.00 15 5 C -0.14 -4.78 10.10 22.49 0.23 -4.55 15 6 C 0.06 2.61 7.23 39.37 0.28 2.89 15 7 N -0.61 -32.42 10.55 -306.36 -3.23 -35.66 15 8 C 0.45 23.84 8.91 179.30 1.60 25.44 15 9 N -0.51 -27.57 5.39 -305.34 -1.65 -29.22 15 10 C -0.31 -17.33 9.78 84.03 0.82 -16.51 15 11 H 0.10 5.82 7.32 -2.91 -0.02 5.80 15 12 C -0.01 -0.73 5.50 84.87 0.47 -0.26 15 13 N -0.92 -49.16 13.05 21.65 0.28 -48.88 15 14 Si 1.01 41.37 29.55 68.60 2.03 43.40 15 15 H -0.26 -10.73 7.11 99.48 0.71 -10.03 15 16 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 17 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 18 O -0.26 -12.85 10.79 -14.32 -0.15 -13.01 15 19 C -0.07 -2.99 7.08 22.87 0.16 -2.83 15 20 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.05 1.33 8.09 -2.39 -0.02 1.31 15 22 H 0.10 1.77 8.08 -2.38 -0.02 1.76 15 23 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 24 H 0.17 2.77 8.06 -2.91 -0.02 2.74 15 25 H 0.13 4.24 8.06 -2.91 -0.02 4.21 15 26 H 0.41 21.84 8.01 -92.71 -0.74 21.10 15 27 H 0.28 14.03 8.31 -92.71 -0.77 13.26 15 Total: -1.00 -65.60 247.00 2.33 -63.27 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.46 Total: 24.86 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 4.60 Total: -4.78 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.60 Total: -113.75 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.15 Total: -13.01 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -65.60 2.33 -63.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.208 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds