Wall clock time and date at job start Mon Mar 30 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38695 * 119.79443 * 2 1 4 4 C 1.38017 * 120.47770 * 179.97438 * 3 2 1 5 5 C 1.38547 * 119.90607 * 0.11107 * 4 3 2 6 6 O 1.35261 * 133.78694 * 179.91266 * 5 4 3 7 7 C 1.34528 * 108.15457 * 179.97438 * 6 5 4 8 8 N 1.37607 * 124.97096 * 180.02562 * 7 6 5 9 9 C 1.36963 * 119.99646 * 0.02562 * 8 7 6 10 10 H 1.08001 * 120.00449 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99552 * 180.02562 * 9 8 7 12 12 N 1.31552 * 119.99700 * 179.72486 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 0.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.30929 * 110.06136 * 0.26103 * 7 6 5 18 18 C 1.35947 * 108.72474 * 359.57598 * 17 7 6 19 19 C 1.37722 * 119.80275 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.47431 * 269.97865 * 1 2 3 21 21 H 1.09003 * 109.47178 * 29.98851 * 1 2 3 22 22 H 1.09007 * 109.46722 * 149.98010 * 1 2 3 23 23 H 1.08001 * 119.75616 * 359.97438 * 3 2 1 24 24 H 1.08006 * 120.04807 * 180.02562 * 4 3 2 25 25 H 0.97000 * 120.00417 * 180.02562 * 8 7 6 26 26 H 0.96999 * 120.00048 * 180.27497 * 12 11 9 27 27 H 1.08002 * 120.13443 * 0.03564 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.2036 0.0000 4 6 3.5762 1.2201 0.0005 5 6 4.2812 0.0274 -0.0013 6 8 5.5981 -0.2814 -0.0028 7 6 5.7144 -1.6217 -0.0036 8 7 6.9059 -2.3100 -0.0047 9 6 8.0922 -1.6254 -0.0045 10 1 8.0924 -0.5454 -0.0031 11 6 9.2941 -2.3197 -0.0061 12 7 10.4335 -1.6622 -0.0114 13 14 9.2938 -4.1877 -0.0093 14 1 9.3010 -4.6850 1.3899 15 1 8.0775 -4.6813 -0.7038 16 1 10.5024 -4.6818 -0.7165 17 7 4.5279 -2.1754 -0.0082 18 6 3.5879 -1.1933 -0.0011 19 6 2.1915 -1.1951 -0.0005 20 1 -0.3634 -0.0004 1.0276 21 1 -0.3634 0.8901 -0.5137 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6488 2.1347 -0.0004 24 1 4.1058 2.1614 0.0009 25 1 6.9057 -3.2800 -0.0056 26 1 11.2734 -2.1474 -0.0166 27 1 1.6504 -2.1298 -0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260191475.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:51 Heat of formation + Delta-G solvation = 39.358727 kcal Electronic energy + Delta-G solvation = -13725.260075 eV Core-core repulsion = 11256.529073 eV Total energy + Delta-G solvation = -2468.731003 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.11116 -37.77904 -35.78383 -33.63149 -32.28975 -31.47674 -28.91504 -26.33127 -24.86482 -21.89746 -21.41771 -20.89699 -18.56066 -17.23983 -16.76292 -15.87664 -15.51150 -14.87874 -14.38487 -13.59822 -13.42243 -13.37912 -12.93983 -12.39949 -11.99323 -11.96735 -11.57540 -11.32670 -11.09596 -10.90342 -10.69942 -10.35633 -10.00637 -9.41044 -8.89693 -8.01949 -7.20092 -6.70261 -4.12666 1.53769 1.84809 2.87591 2.92003 2.97291 3.14105 3.38354 3.83003 4.29351 4.29618 4.84419 5.15151 5.16798 5.41743 5.65038 5.73854 5.76379 5.84998 6.03780 6.08622 6.38688 6.64337 6.83020 6.94694 7.00375 7.18700 7.37393 7.65344 8.17869 8.40505 8.87217 9.12996 10.39909 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.069069 B = 0.006671 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.293989 B = 4196.073007 C = 4586.220798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.078 4.078 3 C -0.153 4.153 4 C -0.071 4.071 5 C -0.037 4.037 6 O -0.231 6.231 7 C 0.482 3.518 8 N -0.514 5.514 9 C -0.325 4.325 10 H 0.122 0.878 11 C 0.053 3.947 12 N -0.859 5.859 13 Si 0.881 3.119 14 H -0.263 1.263 15 H -0.262 1.262 16 H -0.268 1.268 17 N -0.606 5.606 18 C 0.104 3.896 19 C -0.119 4.119 20 H 0.066 0.934 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.124 0.876 24 H 0.122 0.878 25 H 0.410 0.590 26 H 0.282 0.718 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.188 1.495 0.055 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.079 4.079 3 C -0.173 4.173 4 C -0.090 4.090 5 C -0.089 4.089 6 O -0.124 6.124 7 C 0.182 3.818 8 N -0.143 5.143 9 C -0.453 4.453 10 H 0.139 0.861 11 C -0.154 4.154 12 N -0.495 5.495 13 Si 0.706 3.294 14 H -0.188 1.188 15 H -0.187 1.187 16 H -0.193 1.193 17 N -0.353 5.353 18 C -0.014 4.014 19 C -0.141 4.141 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.142 0.858 24 H 0.140 0.860 25 H 0.250 0.750 26 H 0.093 0.907 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.685 0.958 0.045 11.724 hybrid contribution 0.636 -0.522 -0.007 0.823 sum -11.049 0.435 0.039 11.058 Atomic orbital electron populations 1.20690 0.91349 1.02282 1.01877 1.19506 0.95503 0.92506 1.00430 1.20416 0.92162 0.97316 1.07417 1.19631 0.92979 0.94005 1.02367 1.20001 0.81042 0.97215 1.10611 1.84446 1.25034 1.24025 1.78933 1.21257 0.88172 0.77445 0.94936 1.39960 1.00030 1.06982 1.67329 1.19423 0.80570 0.94623 1.50708 0.86088 1.24949 0.94533 0.99595 0.96333 1.69656 0.97585 1.36646 1.45621 0.86575 0.79301 0.83770 0.79734 1.18796 1.18722 1.19294 1.70990 0.95434 1.29065 1.39825 1.19692 0.94546 0.88494 0.98644 1.19788 0.89824 0.97671 1.06776 0.91573 0.91846 0.91859 0.85774 0.86014 0.75005 0.90726 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.00 36.00 0.36 -0.76 15 2 C -0.08 -1.16 5.88 -104.64 -0.61 -1.78 15 3 C -0.15 -2.25 9.68 -39.49 -0.38 -2.64 15 4 C -0.07 -1.22 10.06 -39.55 -0.40 -1.62 15 5 C -0.04 -0.80 7.42 -38.66 -0.29 -1.08 15 6 O -0.23 -5.63 10.11 2.38 0.02 -5.60 15 7 C 0.48 11.77 8.82 -87.63 -0.77 11.00 15 8 N -0.51 -12.43 5.20 -12.90 -0.07 -12.50 15 9 C -0.32 -8.55 10.29 -15.05 -0.15 -8.71 15 10 H 0.12 3.47 7.62 -52.49 -0.40 3.07 15 11 C 0.05 1.36 5.50 -17.46 -0.10 1.27 15 12 N -0.86 -23.18 13.96 55.49 0.77 -22.41 15 13 Si 0.88 18.46 27.74 -169.99 -4.72 13.74 15 14 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 15 H -0.26 -5.22 6.51 56.52 0.37 -4.85 15 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 17 N -0.61 -14.30 11.38 -12.10 -0.14 -14.44 15 18 C 0.10 2.23 7.23 -84.71 -0.61 1.62 15 19 C -0.12 -2.10 9.74 -39.24 -0.38 -2.48 15 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 0.57 8.08 -51.93 -0.42 0.15 15 22 H 0.06 0.62 8.08 -51.93 -0.42 0.20 15 23 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 24 H 0.12 1.84 8.06 -52.48 -0.42 1.42 15 25 H 0.41 9.12 5.87 -40.82 -0.24 8.89 15 26 H 0.28 6.98 8.31 -40.82 -0.34 6.64 15 27 H 0.12 1.93 8.06 -52.49 -0.42 1.50 15 LS Contribution 244.01 15.07 3.68 3.68 Total: -1.00 -28.51 244.01 -6.12 -34.64 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -2.34 Total: 8.06 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -3.34 Total: -5.17 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.57 Total: -49.35 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: 0.02 Total: -5.60 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -4.72 Total: 13.74 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.51 -6.12 -34.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191475.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.995 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds