Wall clock time and date at job start Mon Mar 30 2020 02:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39438 * 126.63890 * 2 1 4 4 C 1.41328 * 126.17972 * 359.41833 * 3 2 1 5 5 H 1.07997 * 120.00012 * 354.87047 * 4 3 2 6 6 C 1.39705 * 119.99849 * 174.87405 * 4 3 2 7 7 N 1.30990 * 119.99928 * 6.01977 * 6 4 3 8 8 Si 1.86799 * 119.99837 * 186.01533 * 6 4 3 9 9 H 1.48498 * 109.47075 * 94.98150 * 8 6 4 10 10 H 1.48503 * 109.47201 * 214.97840 * 8 6 4 11 11 H 1.48494 * 109.47236 * 334.98411 * 8 6 4 12 12 N 1.34730 * 107.63736 * 179.97438 * 3 2 1 13 13 C 1.32446 * 109.16277 * 359.51901 * 12 3 2 14 14 C 1.41528 * 131.63119 * 180.02562 * 13 12 3 15 15 O 1.35938 * 120.33860 * 359.97438 * 14 13 12 16 16 C 1.36399 * 119.32767 * 179.69874 * 14 13 12 17 17 C 1.40535 * 119.69588 * 0.27761 * 16 14 13 18 18 C 1.34837 * 120.35378 * 359.97438 * 17 16 14 19 19 N 1.36147 * 126.64061 * 179.25776 * 2 1 3 20 20 H 1.09000 * 109.46790 * 270.74261 * 1 2 3 21 21 H 1.09002 * 109.47003 * 30.74009 * 1 2 3 22 22 H 1.09002 * 109.46946 * 150.74009 * 1 2 3 23 23 H 0.97005 * 119.99483 * 180.02562 * 7 6 4 24 24 H 0.96694 * 113.99889 * 269.72148 * 15 14 13 25 25 H 1.07995 * 120.15349 * 180.29732 * 16 14 13 26 26 H 1.08002 * 119.82004 * 179.97438 * 17 16 14 27 27 H 1.08002 * 119.63195 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3392 1.1189 0.0000 4 6 1.9218 2.4690 -0.0116 5 1 0.8730 2.7092 -0.1052 6 6 2.8658 3.4930 0.0980 7 7 4.1444 3.2083 0.0927 8 14 2.3047 5.2681 0.2519 9 1 2.2492 5.6470 1.6867 10 1 3.2632 6.1535 -0.4571 11 1 0.9558 5.4149 -0.3513 12 7 3.6131 0.6802 0.0006 13 6 3.6168 -0.6442 0.0114 14 6 4.6773 -1.5814 0.0171 15 8 5.9687 -1.1571 0.0106 16 6 4.3904 -2.9148 0.0348 17 6 3.0505 -3.3386 0.0413 18 6 2.0499 -2.4349 0.0306 19 7 2.3196 -1.0923 0.0142 20 1 -0.3633 0.0133 1.0276 21 1 -0.3633 0.8833 -0.5253 22 1 -0.3633 -0.8966 -0.5023 23 1 4.7998 3.9193 0.1692 24 1 6.3417 -1.0459 -0.8746 25 1 5.1893 -3.6415 0.0442 26 1 2.8211 -4.3939 0.0549 27 1 1.0244 -2.7735 0.0362 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260208950.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:01 Heat of formation + Delta-G solvation = 34.834492 kcal Electronic energy + Delta-G solvation = -14228.856516 eV Core-core repulsion = 11759.929328 eV Total energy + Delta-G solvation = -2468.927188 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.18522 -37.40931 -35.63403 -33.25655 -31.79709 -30.19028 -28.30006 -26.47254 -24.98649 -21.84961 -21.19240 -19.89445 -17.37858 -17.05769 -16.12116 -15.53161 -14.87502 -14.73971 -14.36097 -13.85637 -12.88382 -12.60640 -12.23560 -12.07867 -11.68273 -11.39411 -11.30923 -10.98132 -10.62234 -10.56043 -10.17017 -9.99818 -9.58028 -9.14774 -8.22424 -7.48491 -6.52568 -6.47454 -4.29292 1.61169 2.31606 3.07587 3.14778 3.18021 3.77214 4.02788 4.06459 4.54814 4.96975 5.29547 5.39321 5.54733 5.66856 5.95123 6.09559 6.21986 6.43646 6.59233 6.64456 6.78456 6.87988 7.10367 7.23068 7.45979 7.70394 8.11399 8.32370 8.48460 8.78853 8.98286 9.72477 10.43608 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037680 B = 0.010103 C = 0.008013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.923915 B = 2770.770063 C = 3493.335641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 C -0.221 4.221 3 C 0.239 3.761 4 C -0.433 4.433 5 H 0.086 0.914 6 C 0.070 3.930 7 N -0.745 5.745 8 Si 0.910 3.090 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.458 5.458 13 C 0.177 3.823 14 C 0.127 3.873 15 O -0.480 6.480 16 C -0.162 4.162 17 C -0.177 4.177 18 C 0.039 3.961 19 N -0.333 5.333 20 H 0.043 0.957 21 H 0.068 0.932 22 H 0.036 0.964 23 H 0.274 0.726 24 H 0.381 0.619 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.445 -6.900 -1.526 7.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.333 4.333 3 C 0.113 3.887 4 C -0.466 4.466 5 H 0.104 0.896 6 C -0.152 4.152 7 N -0.369 5.369 8 Si 0.735 3.265 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.182 5.182 13 C -0.064 4.064 14 C 0.077 3.923 15 O -0.287 6.287 16 C -0.185 4.185 17 C -0.201 4.201 18 C -0.087 4.087 19 N -0.008 5.008 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.236 0.764 25 H 0.144 0.856 26 H 0.150 0.850 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.619 -6.206 -0.916 6.478 hybrid contribution -0.784 0.176 -0.378 0.888 sum -2.403 -6.029 -1.294 6.618 Atomic orbital electron populations 1.19597 0.88611 1.00621 0.99979 1.21274 0.92951 0.84976 1.34052 1.18388 0.85917 0.92218 0.92156 1.18731 0.94589 0.87688 1.45553 0.89623 1.25935 0.94603 1.01113 0.93557 1.70114 1.01011 1.33969 1.31767 0.86275 0.79512 0.81704 0.79026 1.19630 1.20295 1.18632 1.71698 1.21525 1.01483 1.23470 1.21754 0.83371 0.92721 1.08567 1.17014 0.82263 0.88874 1.04102 1.84809 1.22308 1.89028 1.32559 1.20822 0.96668 0.94106 1.06950 1.20061 0.91512 0.98579 1.09901 1.21276 0.99976 0.81937 1.05488 1.42308 1.08708 1.04485 1.45341 0.93810 0.91343 0.94501 0.91562 0.76385 0.85629 0.84971 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.59 10.09 36.01 0.36 -0.22 15 2 C -0.22 -5.48 7.16 -80.23 -0.57 -6.05 15 3 C 0.24 6.78 6.66 -84.97 -0.57 6.22 15 4 C -0.43 -11.88 9.12 -37.86 -0.35 -12.23 15 5 H 0.09 2.16 7.29 -52.49 -0.38 1.78 15 6 C 0.07 1.86 5.48 -17.36 -0.10 1.77 15 7 N -0.75 -21.04 11.96 55.54 0.66 -20.38 15 8 Si 0.91 19.28 29.56 -169.99 -5.03 14.26 15 9 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 11 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 12 N -0.46 -13.42 9.54 -10.22 -0.10 -13.51 15 13 C 0.18 4.57 7.73 -155.75 -1.20 3.37 15 14 C 0.13 2.77 6.74 -38.99 -0.26 2.51 15 15 O -0.48 -9.85 13.52 -19.55 -0.26 -10.11 15 16 C -0.16 -2.90 10.00 -39.38 -0.39 -3.30 15 17 C -0.18 -2.92 9.98 -39.92 -0.40 -3.32 15 18 C 0.04 0.74 10.82 -16.47 -0.18 0.56 15 19 N -0.33 -7.85 2.93 -57.23 -0.17 -8.02 15 20 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.07 1.30 7.54 -51.93 -0.39 0.91 15 22 H 0.04 0.62 8.13 -51.93 -0.42 0.20 15 23 H 0.27 7.03 8.30 -40.82 -0.34 6.69 15 24 H 0.38 5.98 9.06 45.56 0.41 6.40 15 25 H 0.13 1.85 8.06 -52.49 -0.42 1.43 15 26 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 27 H 0.14 2.15 8.04 -52.49 -0.42 1.73 15 LS Contribution 245.23 15.07 3.70 3.70 Total: -1.00 -33.20 245.23 -6.46 -39.66 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -1.61 Total: 5.12 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -3.65 Total: -10.70 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.40 Total: -41.91 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -0.26 Total: -10.11 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -33.20 -6.46 -39.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260208950.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.490 kcal (2) G-P(sol) polarization free energy of solvation -33.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds