Wall clock time and date at job start Mon Mar 30 2020 02:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30489 * 126.05768 * 2 1 4 4 N 1.39877 * 110.09556 * 179.97438 * 3 2 1 5 5 C 1.36993 * 125.50023 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99736 * 179.97438 * 5 4 3 7 7 C 1.38890 * 120.00583 * 359.97247 * 5 4 3 8 8 N 1.31400 * 119.99658 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00499 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47359 * 89.99773 * 9 7 5 11 11 H 1.48500 * 109.47282 * 210.00429 * 9 7 5 12 12 H 1.48508 * 109.46744 * 329.99796 * 9 7 5 13 13 C 1.37703 * 108.99281 * 359.97438 * 4 3 2 14 14 C 1.38942 * 133.75272 * 180.02562 * 13 4 3 15 15 C 1.38381 * 119.69798 * 180.02562 * 14 13 4 16 16 O 1.35874 * 119.74124 * 180.02562 * 15 14 13 17 17 C 1.39339 * 120.51751 * 359.95058 * 15 14 13 18 18 C 1.36495 * 120.55023 * 0.03005 * 17 15 14 19 19 C 1.39897 * 119.85340 * 359.97438 * 18 17 15 20 20 H 1.08992 * 109.47611 * 270.00637 * 1 2 3 21 21 H 1.09000 * 109.47239 * 30.01084 * 1 2 3 22 22 H 1.09007 * 109.46703 * 150.00736 * 1 2 3 23 23 H 0.97002 * 120.00152 * 180.02562 * 8 7 5 24 24 H 1.07998 * 120.14917 * 359.97438 * 14 13 4 25 25 H 0.96693 * 113.99509 * 269.95371 * 16 15 14 26 26 H 1.08004 * 119.72603 * 180.30302 * 17 15 14 27 27 H 1.08002 * 120.06933 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0549 0.0000 4 7 3.6199 0.6702 0.0006 5 6 4.6914 1.5237 0.0012 6 1 5.6965 1.1285 0.0021 7 6 4.4854 2.8973 0.0008 8 7 3.2625 3.3781 -0.0008 9 14 5.9465 4.0611 0.0010 10 1 6.3343 4.3690 -1.3990 11 1 5.5781 5.3180 0.7006 12 1 7.0889 3.4211 0.7017 13 6 3.6927 -0.7049 0.0016 14 6 4.7457 -1.6113 0.0029 15 6 4.4811 -2.9696 0.0031 16 8 5.5102 -3.8568 0.0049 17 6 3.1676 -3.4345 0.0030 18 6 2.1213 -2.5580 0.0021 19 6 2.3667 -1.1807 0.0018 20 1 -0.3634 0.0001 1.0276 21 1 -0.3634 0.8899 -0.5140 22 1 -0.3633 -0.8901 -0.5138 23 1 3.1185 4.3374 -0.0015 24 1 5.7661 -1.2574 0.0029 25 1 5.8088 -4.1144 -0.8779 26 1 2.9757 -4.4974 0.0081 27 1 1.1063 -2.9269 0.0016 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260229222.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:53 Heat of formation + Delta-G solvation = 18.588195 kcal Electronic energy + Delta-G solvation = -14085.053284 eV Core-core repulsion = 11615.421604 eV Total energy + Delta-G solvation = -2469.631680 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.75739 -39.31307 -36.45316 -35.38891 -33.65646 -30.74757 -29.61634 -29.47854 -26.19252 -23.56718 -22.69623 -21.13029 -19.55494 -18.72137 -17.40172 -17.09502 -16.28772 -16.14862 -15.67498 -15.18678 -14.81981 -14.20323 -13.77589 -13.64279 -13.40183 -13.21601 -12.95095 -12.69852 -12.36841 -12.20733 -12.13226 -11.35038 -11.16029 -10.84296 -10.56784 -9.07591 -8.99899 -8.50343 -6.13868 0.25672 0.78638 1.33256 1.40204 1.50139 1.99255 2.04097 2.53223 2.83345 3.13133 3.50940 4.00854 4.08430 4.15824 4.41093 4.72718 4.86626 4.87627 4.92910 4.99565 5.14428 5.18117 5.37705 5.59813 5.68251 5.83216 6.02264 6.21730 6.66278 7.00092 7.35494 7.55264 8.50058 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.028758 B = 0.010728 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.395204 B = 2609.356302 C = 3565.076626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.015 4.015 3 N -0.253 5.253 4 N -0.216 5.216 5 C -0.356 4.356 6 H 0.120 0.880 7 C -0.005 4.005 8 N -0.831 5.831 9 Si 1.013 2.987 10 H -0.263 1.263 11 H -0.270 1.270 12 H -0.254 1.254 13 C 0.035 3.965 14 C -0.174 4.174 15 C 0.127 3.873 16 O -0.504 6.504 17 C -0.204 4.204 18 C -0.022 4.022 19 C -0.221 4.221 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.097 0.903 23 H 0.276 0.724 24 H 0.111 0.889 25 H 0.406 0.594 26 H 0.154 0.846 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -8.528 -1.738 8.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.183 4.183 3 N -0.075 5.075 4 N 0.014 4.986 5 C -0.485 4.485 6 H 0.138 0.862 7 C -0.215 4.215 8 N -0.460 5.460 9 Si 0.832 3.168 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.178 1.178 13 C -0.087 4.087 14 C -0.197 4.197 15 C 0.080 3.920 16 O -0.316 6.316 17 C -0.224 4.224 18 C -0.042 4.042 19 C -0.231 4.231 20 H 0.096 0.904 21 H 0.080 0.920 22 H 0.116 0.884 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.264 0.736 26 H 0.171 0.829 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.500 -6.881 -1.135 6.992 hybrid contribution 0.871 0.108 -0.462 0.991 sum 0.371 -6.773 -1.597 6.968 Atomic orbital electron populations 1.20021 0.84166 1.03349 1.02952 1.24305 0.98227 0.89166 1.06558 1.77427 0.87013 1.22595 1.20440 1.44703 1.03877 1.01859 1.48186 1.20236 0.85690 0.88259 1.54346 0.86212 1.26662 1.01307 0.98942 0.94606 1.70364 1.22244 1.14424 1.38967 0.84674 0.76245 0.76523 0.79313 1.18733 1.19454 1.17768 1.19115 0.96660 0.85020 1.07875 1.20150 0.96697 0.92189 1.10676 1.18040 0.87725 0.86206 1.00031 1.84713 1.50488 1.61272 1.35147 1.20868 0.90738 1.00784 1.10018 1.20356 1.00182 0.88919 0.94773 1.19912 0.91180 0.95160 1.16826 0.90379 0.91962 0.88400 0.91408 0.87056 0.73555 0.82862 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.61 10.48 71.24 0.75 -0.86 15 2 C -0.02 -0.75 7.44 44.79 0.33 -0.41 15 3 N -0.25 -14.64 10.18 -43.50 -0.44 -15.08 15 4 N -0.22 -12.59 3.74 -184.01 -0.69 -13.27 15 5 C -0.36 -20.29 10.14 84.04 0.85 -19.44 15 6 H 0.12 6.34 7.78 -2.91 -0.02 6.32 15 7 C -0.01 -0.29 5.50 84.91 0.47 0.17 15 8 N -0.83 -48.03 11.76 21.65 0.25 -47.77 15 9 Si 1.01 40.71 29.55 68.60 2.03 42.74 15 10 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 11 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 12 H -0.25 -9.64 7.11 99.48 0.71 -8.94 15 13 C 0.03 1.79 6.81 39.04 0.27 2.06 15 14 C -0.17 -7.77 9.91 22.47 0.22 -7.55 15 15 C 0.13 4.65 6.70 22.57 0.15 4.80 15 16 O -0.50 -14.95 13.49 -92.13 -1.24 -16.19 15 17 C -0.20 -6.65 9.90 22.13 0.22 -6.43 15 18 C -0.02 -0.78 10.05 22.26 0.22 -0.56 15 19 C -0.22 -10.16 6.33 -20.20 -0.13 -10.29 15 20 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 21 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.10 2.64 8.14 -2.38 -0.02 2.62 15 23 H 0.28 14.61 8.31 -92.71 -0.77 13.84 15 24 H 0.11 4.85 8.01 -2.91 -0.02 4.82 15 25 H 0.41 7.57 9.06 -74.06 -0.67 6.90 15 26 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 27 H 0.15 4.09 8.06 -2.91 -0.02 4.07 15 Total: -1.00 -73.04 246.99 3.79 -69.25 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.53 Total: 18.85 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.35 Total: -38.51 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -0.88 Total: -76.13 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.24 Total: -16.19 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -73.04 3.79 -69.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260229222.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.838 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds