Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50704 * 109.47244 * 239.99841 * 2 1 3 5 5 H 1.07997 * 120.00516 * 275.02489 * 4 2 1 6 6 C 1.37878 * 119.99798 * 95.02205 * 4 2 1 7 7 N 1.31508 * 120.00170 * 184.91555 * 6 4 2 8 8 Si 1.86807 * 119.99876 * 4.91681 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83582 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.83208 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83521 * 8 6 4 12 12 C 1.50699 * 109.47088 * 119.99982 * 2 1 3 13 13 C 1.38574 * 120.26770 * 60.00248 * 12 2 1 14 14 N 1.31726 * 121.37508 * 180.02562 * 13 12 2 15 15 C 1.32246 * 121.62212 * 0.02562 * 14 13 12 16 16 O 1.35092 * 133.71504 * 180.02562 * 15 14 13 17 17 C 1.34256 * 108.26644 * 179.97438 * 16 15 14 18 18 N 1.29909 * 110.29498 * 359.97438 * 17 16 15 19 19 C 1.35924 * 108.70864 * 0.02562 * 18 17 16 20 20 C 1.38242 * 120.27608 * 239.72706 * 12 2 1 21 21 H 1.09007 * 109.46622 * 54.98112 * 1 2 3 22 22 H 1.08992 * 109.47295 * 294.98307 * 1 2 3 23 23 H 1.09002 * 109.46974 * 174.97750 * 1 2 3 24 24 H 0.97003 * 119.99870 * 179.97438 * 7 6 4 25 25 H 1.08003 * 119.31063 * 359.97438 * 13 12 2 26 26 H 1.08000 * 124.84993 * 180.02562 * 17 16 15 27 27 H 1.07999 * 120.93694 * 359.97364 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.1352 -1.7855 -1.2292 6 6 2.3607 0.0121 -2.3579 7 7 2.7064 -0.6130 -3.4620 8 14 2.3146 1.8792 -2.3170 9 1 3.6002 2.3945 -1.7815 10 1 2.1072 2.3994 -3.6923 11 1 1.1997 2.3278 -1.4447 12 6 2.0323 -0.7104 1.2305 13 6 1.7010 -2.0370 1.4552 14 7 2.1276 -2.6790 2.5235 15 6 2.8895 -2.0886 3.4290 16 8 3.4527 -2.4992 4.5862 17 6 4.1366 -1.4694 5.1100 18 7 4.0365 -0.4255 4.3432 19 6 3.2666 -0.7453 3.2697 20 6 2.8321 -0.0457 2.1413 21 1 -0.3633 0.5898 -0.8417 22 1 -0.3633 0.4340 0.9314 23 1 -0.3633 -1.0237 -0.0900 24 1 2.9371 -0.1046 -4.2553 25 1 1.0794 -2.5552 0.7400 26 1 4.6914 -1.5042 6.0359 27 1 3.1090 0.9868 1.9875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260234401.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 48.134933 kcal Electronic energy + Delta-G solvation = -14018.754423 eV Core-core repulsion = 11550.403985 eV Total energy + Delta-G solvation = -2468.350438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.07474 -38.99549 -34.79237 -34.76512 -32.07167 -30.61637 -28.83734 -25.34193 -24.26229 -23.49359 -21.83301 -20.33619 -18.16315 -17.69113 -16.72068 -16.62008 -15.73468 -14.76721 -14.21924 -13.46734 -13.25076 -12.89568 -12.66386 -12.58847 -12.19657 -11.77974 -11.28812 -11.15203 -10.97914 -10.76948 -10.22927 -9.90535 -9.44462 -8.94638 -8.72802 -8.67650 -8.26454 -6.21616 -4.23216 0.86923 1.53635 2.37885 2.65363 3.20466 3.28882 3.29982 4.00925 4.06742 4.29554 4.61543 4.91115 5.10503 5.36532 5.42726 5.51240 5.93857 6.07184 6.27487 6.31252 6.40959 6.51287 6.67974 6.85889 6.96240 7.23543 7.54102 7.65044 8.05614 8.32704 8.80678 9.38483 10.90690 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044623 B = 0.008211 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.322860 B = 3409.209008 C = 3579.003108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.047 3.953 3 H 0.045 0.955 4 C -0.515 4.515 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.891 5.891 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.262 1.262 12 C -0.077 4.077 13 C 0.163 3.837 14 N -0.468 5.468 15 C 0.191 3.809 16 O -0.214 6.214 17 C 0.221 3.779 18 N -0.477 5.477 19 C -0.028 4.028 20 C -0.036 4.036 21 H 0.051 0.949 22 H 0.026 0.974 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.179 0.821 26 H 0.257 0.743 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.277 0.845 12.662 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 H 0.063 0.937 4 C -0.553 4.553 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.187 1.187 12 C -0.081 4.081 13 C 0.000 4.000 14 N -0.184 5.184 15 C 0.014 3.986 16 O -0.102 6.102 17 C -0.011 4.011 18 N -0.206 5.206 19 C -0.141 4.141 20 C -0.063 4.063 21 H 0.070 0.930 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.196 0.804 26 H 0.273 0.727 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.124 0.566 12.768 12.781 hybrid contribution 0.230 1.163 -0.240 1.209 sum 0.106 1.728 12.528 12.647 Atomic orbital electron populations 1.22041 0.97363 1.01122 0.99007 1.18295 0.93051 0.95780 0.90164 0.93707 1.20884 1.44732 0.95514 0.94130 0.90258 1.25020 0.94102 0.98376 0.95185 1.69879 1.45161 1.36057 1.01703 0.86917 0.79285 0.86257 0.77538 1.19983 1.21289 1.18665 1.21380 0.95225 0.95311 0.96157 1.22788 0.95029 0.91587 0.90580 1.66397 1.11301 1.38953 1.01779 1.20211 0.99091 0.90655 0.88655 1.84398 1.54899 1.39904 1.30990 1.28204 0.94155 0.79305 0.99458 1.70504 1.17879 1.28412 1.03820 1.20450 1.01996 0.94537 0.97141 1.20726 0.95458 1.00354 0.89715 0.92955 0.95534 0.92948 0.92332 0.80450 0.72729 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.92 37.16 0.33 -2.28 15 2 C 0.05 1.00 2.15 -92.92 -0.20 0.80 15 3 H 0.04 0.96 5.07 -51.93 -0.26 0.70 15 4 C -0.52 -13.23 8.64 -34.44 -0.30 -13.53 15 5 H 0.08 2.20 7.65 -52.49 -0.40 1.80 15 6 C 0.08 2.06 5.47 -17.82 -0.10 1.96 15 7 N -0.89 -25.85 13.96 55.43 0.77 -25.08 15 8 Si 0.87 20.14 26.99 -169.99 -4.59 15.55 15 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 11 H -0.26 -5.68 6.82 56.52 0.39 -5.29 15 12 C -0.08 -1.53 4.78 -104.50 -0.50 -2.03 15 13 C 0.16 3.12 9.82 -17.47 -0.17 2.95 15 14 N -0.47 -9.17 10.38 -13.00 -0.13 -9.31 15 15 C 0.19 3.62 8.60 -16.55 -0.14 3.47 15 16 O -0.21 -3.38 10.77 3.62 0.04 -3.35 15 17 C 0.22 2.74 13.13 51.95 0.68 3.42 15 18 N -0.48 -7.78 11.34 -12.51 -0.14 -7.93 15 19 C -0.03 -0.52 7.26 -84.69 -0.61 -1.14 15 20 C -0.04 -0.68 9.84 -39.04 -0.38 -1.06 15 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.05 0.94 7.58 -51.93 -0.39 0.55 15 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 15 25 H 0.18 3.14 7.54 -52.48 -0.40 2.75 15 26 H 0.26 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.14 2.43 8.00 -52.49 -0.42 2.01 15 LS Contribution 241.53 15.07 3.64 3.64 Total: -1.00 -30.90 241.53 -4.10 -35.00 By element: Atomic # 1 Polarization: 1.20 SS G_CDS: -2.29 Total: -1.09 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.39 Total: -7.44 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.50 Total: -42.31 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.59 Total: 15.55 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.90 -4.10 -35.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260234401.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.134 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds