Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35689 * 117.00380 * 2 1 4 4 N 1.32181 * 119.88959 * 0.02562 * 3 2 1 5 5 C 1.32246 * 122.42402 * 180.02562 * 4 3 2 6 6 C 1.36818 * 121.24924 * 0.02562 * 5 4 3 7 7 C 1.39531 * 118.86226 * 359.97438 * 6 5 4 8 8 C 1.47280 * 134.96407 * 179.97438 * 7 6 5 9 9 C 1.40931 * 126.94386 * 0.02562 * 8 7 6 10 10 H 1.08000 * 120.00568 * 359.97438 * 9 8 7 11 11 C 1.39751 * 119.99657 * 179.97438 * 9 8 7 12 12 N 1.31042 * 120.00499 * 0.02562 * 11 9 8 13 13 Si 1.86810 * 119.99727 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47056 * 60.00345 * 13 11 9 15 15 H 1.48492 * 109.47036 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47083 * 300.00180 * 13 11 9 17 17 C 1.39025 * 106.11316 * 180.02562 * 8 7 6 18 18 N 1.35518 * 109.28148 * 0.02562 * 17 8 7 19 19 H 0.96993 * 124.68651 * 179.97438 * 18 17 8 20 20 C 1.38002 * 110.61926 * 359.97438 * 18 17 8 21 21 H 1.09004 * 109.46801 * 300.00243 * 1 2 3 22 22 H 1.08999 * 109.46851 * 60.00198 * 1 2 3 23 23 H 1.08996 * 109.47491 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.37794 * 179.97438 * 5 4 3 25 25 H 1.07996 * 120.57434 * 179.97438 * 6 5 4 26 26 H 0.97005 * 120.00179 * 179.97438 * 12 11 9 27 27 H 1.07999 * 125.35745 * 179.73568 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 7 1.3232 2.3162 0.0005 5 6 1.8709 3.5199 0.0000 6 6 3.2295 3.6814 -0.0015 7 6 4.0426 2.5474 -0.0021 8 6 5.4960 2.3089 -0.0041 9 6 6.5143 3.2832 -0.0057 10 1 6.2580 4.3323 -0.0059 11 6 7.8558 2.8916 -0.0070 12 7 8.1670 1.6187 -0.0073 13 14 9.2056 4.1831 -0.0098 14 1 9.0809 5.0321 1.2022 15 1 10.5311 3.5136 -0.0115 16 1 9.0778 5.0301 -1.2229 17 6 5.6604 0.9284 -0.0042 18 7 4.4431 0.3328 -0.0030 19 1 4.2978 -0.6262 -0.0031 20 6 3.4389 1.2794 -0.0015 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.2337 4.3920 0.0001 25 1 3.6653 4.6695 -0.0023 26 1 9.0982 1.3470 -0.0086 27 1 6.6089 0.4120 -0.0096 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238735.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = 20.157165 kcal Electronic energy + Delta-G solvation = -14024.268267 eV Core-core repulsion = 11554.704622 eV Total energy + Delta-G solvation = -2469.563645 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.27007 -38.08250 -36.28779 -33.58295 -30.85020 -28.92961 -28.50781 -26.58138 -24.95216 -22.26344 -21.16631 -19.69205 -17.92651 -16.98019 -15.94734 -15.42809 -15.24859 -14.89319 -14.07321 -13.86932 -13.26393 -13.00908 -12.58830 -11.78409 -11.68513 -11.26029 -11.18017 -11.16392 -10.88052 -10.64638 -10.14831 -9.86210 -9.44034 -8.88832 -8.53380 -7.22396 -6.77178 -6.56509 -4.07194 2.10333 2.49496 3.08825 3.14117 3.17756 3.73499 4.04254 4.11682 4.42867 4.78962 5.27851 5.50233 5.56414 5.65028 5.80395 5.89216 6.03847 6.34425 6.50527 6.72540 7.02719 7.23091 7.32667 7.67718 7.73501 7.95317 8.21579 8.53565 8.83958 8.89773 9.04468 9.08055 10.42065 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054987 B = 0.008015 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.084766 B = 3492.512997 C = 3986.453042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.324 6.324 3 C 0.301 3.699 4 N -0.540 5.540 5 C 0.034 3.966 6 C -0.130 4.130 7 C -0.089 4.089 8 C 0.016 3.984 9 C -0.417 4.417 10 H 0.073 0.927 11 C 0.056 3.944 12 N -0.835 5.835 13 Si 0.920 3.080 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.067 4.067 18 N -0.568 5.568 19 H 0.400 0.600 20 C 0.022 3.978 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.275 0.725 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -1.315 0.001 6.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.232 6.232 3 C 0.112 3.888 4 N -0.266 5.266 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.102 4.102 8 C 0.011 3.989 9 C -0.450 4.450 10 H 0.091 0.909 11 C -0.154 4.154 12 N -0.466 5.466 13 Si 0.746 3.254 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.194 1.194 17 C -0.196 4.196 18 N -0.168 5.168 19 H 0.234 0.766 20 C -0.092 4.092 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.157 0.843 25 H 0.138 0.862 26 H 0.086 0.914 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.734 -1.790 0.000 6.968 hybrid contribution 1.183 0.333 -0.002 1.229 sum -5.551 -1.457 -0.003 5.739 Atomic orbital electron populations 1.22618 0.78709 1.01527 1.01895 1.86134 1.21782 1.25857 1.89439 1.18711 0.85793 0.84791 0.99495 1.66906 1.39476 0.98311 1.21906 1.21228 0.92494 0.92438 1.05196 1.20919 0.93305 0.98225 1.02641 1.19426 0.95128 0.90304 1.05380 1.18000 0.87460 0.92069 1.01422 1.18681 0.89374 0.93518 1.43401 0.90883 1.25648 0.99641 0.95968 0.94134 1.69384 1.19548 1.15903 1.41733 0.86163 0.79078 0.80696 0.79480 1.19394 1.20666 1.19400 1.23614 0.86575 0.93705 1.15657 1.41454 1.05043 1.06761 1.63566 0.76579 1.18052 0.86938 0.91313 1.12916 0.92977 0.92973 0.89815 0.84298 0.86154 0.91354 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.39 101.05 1.05 1.75 15 2 O -0.32 -6.17 10.49 -18.77 -0.20 -6.37 15 3 C 0.30 6.54 7.53 -16.91 -0.13 6.42 15 4 N -0.54 -11.30 9.20 -13.42 -0.12 -11.42 15 5 C 0.03 0.67 11.12 -17.89 -0.20 0.47 15 6 C -0.13 -2.83 10.11 -39.61 -0.40 -3.23 15 7 C -0.09 -2.21 6.40 -104.91 -0.67 -2.89 15 8 C 0.02 0.42 6.10 -104.91 -0.64 -0.22 15 9 C -0.42 -11.10 9.42 -38.00 -0.36 -11.46 15 10 H 0.07 1.87 7.84 -52.49 -0.41 1.45 15 11 C 0.06 1.41 5.49 -17.32 -0.10 1.32 15 12 N -0.83 -21.20 10.33 55.54 0.57 -20.62 15 13 Si 0.92 19.15 29.56 -169.99 -5.02 14.12 15 14 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 16 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 17 C -0.07 -1.69 10.89 -15.63 -0.17 -1.86 15 18 N -0.57 -12.71 5.98 -9.71 -0.06 -12.77 15 19 H 0.40 7.55 8.96 -40.82 -0.37 7.19 15 20 C 0.02 0.51 7.23 -83.76 -0.61 -0.10 15 21 H 0.05 0.75 8.11 -51.93 -0.42 0.33 15 22 H 0.05 0.75 8.11 -51.93 -0.42 0.33 15 23 H 0.08 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.14 2.26 8.06 -52.48 -0.42 1.84 15 25 H 0.12 2.38 8.06 -52.49 -0.42 1.96 15 26 H 0.28 6.46 8.30 -40.82 -0.34 6.12 15 27 H 0.20 4.99 5.68 -52.49 -0.30 4.69 15 LS Contribution 242.80 15.07 3.66 3.66 Total: -1.00 -28.71 242.80 -5.71 -34.42 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -2.32 Total: 8.77 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.22 Total: -9.79 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.39 Total: -44.81 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.20 Total: -6.37 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.71 -5.71 -34.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238735.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.579 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds