Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40017 * 125.95485 * 2 1 4 4 C 1.30150 * 109.77936 * 179.97438 * 3 2 1 5 5 C 1.41578 * 108.68882 * 359.97438 * 4 3 2 6 6 C 1.40175 * 133.49000 * 179.97438 * 5 4 3 7 7 C 1.36226 * 119.93589 * 180.02562 * 6 5 4 8 8 C 1.39603 * 120.62170 * 359.74678 * 7 6 5 9 9 O 1.35721 * 119.78530 * 180.28070 * 8 7 6 10 10 C 1.34824 * 116.99299 * 354.68242 * 9 8 7 11 11 H 1.07994 * 120.00459 * 5.08437 * 10 9 8 12 12 C 1.38641 * 119.99476 * 185.07366 * 10 9 8 13 13 N 1.31568 * 120.00598 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99908 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46623 * 60.00311 * 14 12 10 16 16 H 1.48493 * 109.47141 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46955 * 300.00707 * 14 12 10 18 18 C 1.38290 * 120.43816 * 0.51506 * 8 7 6 19 19 C 1.37192 * 125.95803 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47448 * 270.04596 * 1 2 3 21 21 H 1.08999 * 109.47202 * 30.04299 * 1 2 3 22 22 H 1.08998 * 109.47357 * 150.04498 * 1 2 3 23 23 H 1.08002 * 125.65511 * 180.02562 * 4 3 2 24 24 H 1.08004 * 120.03409 * 0.05178 * 6 5 4 25 25 H 1.07997 * 119.68713 * 180.02562 * 7 6 5 26 26 H 0.96993 * 120.00050 * 179.97438 * 13 12 10 27 27 H 1.08000 * 120.16119 * 179.77133 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2870 1.1334 0.0000 4 6 3.5370 0.7708 0.0005 5 6 3.5991 -0.6436 0.0015 6 6 4.6574 -1.5628 0.0020 7 6 4.3965 -2.8998 0.0025 8 6 3.0812 -3.3677 0.0078 9 8 2.8408 -4.7034 0.0140 10 6 3.9094 -5.5181 -0.0968 11 1 4.9064 -5.1032 -0.1023 12 6 3.7281 -6.8884 -0.2033 13 7 2.5134 -7.3939 -0.1968 14 14 5.2086 -8.0173 -0.3560 15 1 6.0749 -7.8619 0.8400 16 1 4.7490 -9.4258 -0.4552 17 1 5.9788 -7.6614 -1.5747 18 6 2.0215 -2.4792 0.0020 19 6 2.2705 -1.1105 0.0005 20 1 -0.3634 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3634 -0.8904 -0.5131 23 1 4.3861 1.4383 0.0011 24 1 5.6786 -1.2113 0.0024 25 1 5.2149 -3.6045 0.0032 26 1 2.3867 -8.3526 -0.2717 27 1 1.0058 -2.8461 0.0025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285652.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = 43.737515 kcal Electronic energy + Delta-G solvation = -13813.490549 eV Core-core repulsion = 11344.949425 eV Total energy + Delta-G solvation = -2468.541124 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.21318 -40.16074 -36.81943 -34.48432 -34.10392 -31.29657 -29.85485 -27.74690 -26.93358 -23.87190 -22.80957 -21.66539 -19.95092 -18.62647 -17.80502 -16.97435 -16.42013 -16.22785 -15.88074 -15.42635 -15.20440 -14.62816 -14.11254 -13.76843 -13.71827 -13.39465 -13.16658 -12.77487 -12.50596 -12.15537 -11.97906 -11.67383 -11.22121 -10.96231 -10.72847 -9.00231 -8.79534 -8.47683 -6.16063 0.16089 0.70522 1.38515 1.47936 1.53974 1.57807 1.74017 2.19809 2.82402 3.14262 3.37770 3.64756 3.93412 4.10725 4.31099 4.40787 4.46532 4.57977 4.64143 4.75963 4.83212 5.02403 5.21507 5.51808 5.61293 5.67003 5.99770 6.00670 6.20356 6.77155 6.96457 7.72347 8.74724 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.055517 B = 0.007068 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.229154 B = 3960.386001 C = 4445.809909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.425 5.425 3 N -0.299 5.299 4 C 0.096 3.904 5 C -0.260 4.260 6 C 0.013 3.987 7 C -0.254 4.254 8 C 0.168 3.832 9 O -0.221 6.221 10 C -0.417 4.417 11 H 0.112 0.888 12 C -0.021 4.021 13 N -0.919 5.919 14 Si 1.021 2.979 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.255 1.255 18 C -0.257 4.257 19 C 0.160 3.840 20 H 0.075 0.925 21 H 0.102 0.898 22 H 0.084 0.916 23 H 0.232 0.768 24 H 0.167 0.833 25 H 0.137 0.863 26 H 0.274 0.726 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.716 11.299 -0.051 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.215 5.215 3 N -0.113 5.113 4 C -0.099 4.099 5 C -0.268 4.268 6 C -0.007 4.007 7 C -0.274 4.274 8 C 0.114 3.886 9 O -0.125 6.125 10 C -0.493 4.493 11 H 0.129 0.871 12 C -0.219 4.219 13 N -0.557 5.557 14 Si 0.840 3.160 15 H -0.179 1.179 16 H -0.200 1.200 17 H -0.179 1.179 18 C -0.282 4.282 19 C 0.044 3.956 20 H 0.094 0.906 21 H 0.121 0.879 22 H 0.102 0.898 23 H 0.248 0.752 24 H 0.184 0.816 25 H 0.155 0.845 26 H 0.083 0.917 27 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.366 11.975 -0.043 12.207 hybrid contribution 0.439 -1.580 -0.021 1.640 sum 2.804 10.395 -0.064 10.767 Atomic orbital electron populations 1.21900 0.72898 1.04866 1.03672 1.48450 1.06570 1.00856 1.65589 1.76529 1.02816 1.09224 1.22696 1.24386 0.95465 0.93021 0.96986 1.19096 0.92809 0.94817 1.20054 1.20459 0.99010 0.90143 0.91069 1.20990 0.95788 0.97327 1.13264 1.19469 0.93987 0.84234 0.90915 1.83933 1.36506 1.12325 1.79765 1.21930 0.86526 0.87936 1.52861 0.87119 1.26649 1.01785 0.97887 0.95544 1.70188 1.23521 1.13863 1.48083 0.84612 0.75466 0.75865 0.80089 1.17873 1.19982 1.17927 1.18684 0.97744 0.88885 1.22882 1.18467 0.91787 0.88451 0.96926 0.90610 0.87925 0.89770 0.75216 0.81569 0.84535 0.91740 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.72 11.45 127.77 1.46 4.18 15 2 N -0.43 -14.60 4.07 -361.08 -1.47 -16.07 15 3 N -0.30 -9.61 12.44 -56.23 -0.70 -10.31 15 4 C 0.10 2.71 12.04 85.77 1.03 3.74 15 5 C -0.26 -9.03 6.17 -21.35 -0.13 -9.17 15 6 C 0.01 0.45 10.05 22.27 0.22 0.67 15 7 C -0.25 -10.54 9.08 22.13 0.20 -10.34 15 8 C 0.17 8.35 6.64 22.61 0.15 8.50 15 9 O -0.22 -13.05 9.74 -22.36 -0.22 -13.27 15 10 C -0.42 -23.38 9.48 67.92 0.64 -22.73 15 11 H 0.11 5.54 5.17 -2.91 -0.02 5.52 15 12 C -0.02 -1.13 5.49 84.83 0.47 -0.67 15 13 N -0.92 -55.27 13.67 21.61 0.30 -54.97 15 14 Si 1.02 41.17 29.55 68.60 2.03 43.19 15 15 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 16 H -0.28 -10.80 7.11 99.48 0.71 -10.10 15 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 15 18 C -0.26 -11.67 9.96 22.49 0.22 -11.45 15 19 C 0.16 6.33 6.88 39.15 0.27 6.60 15 20 H 0.08 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.10 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.23 3.94 8.06 -2.91 -0.02 3.92 15 24 H 0.17 3.85 8.06 -2.91 -0.02 3.82 15 25 H 0.14 5.49 5.59 -2.91 -0.02 5.47 15 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 27 H 0.11 4.95 8.06 -2.91 -0.02 4.93 15 Total: -1.00 -71.76 245.72 5.67 -66.09 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 1.19 Total: 16.00 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 4.54 Total: -30.67 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -1.87 Total: -81.35 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.22 Total: -13.27 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -71.76 5.67 -66.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285652.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.826 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds