Wall clock time and date at job start Mon Mar 30 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30245 * 126.11008 * 2 1 4 4 N 1.39861 * 110.09478 * 179.97438 * 3 2 1 5 5 H 0.97003 * 125.45530 * 180.02562 * 4 3 2 6 6 C 1.37150 * 109.07933 * 359.97438 * 4 3 2 7 7 C 1.39334 * 133.67605 * 179.97438 * 6 4 3 8 8 C 1.36447 * 120.09189 * 179.97438 * 7 6 4 9 9 C 1.39554 * 120.75577 * 359.97177 * 8 7 6 10 10 O 1.35799 * 119.83546 * 180.02562 * 9 8 7 11 11 C 1.34818 * 117.00409 * 174.47473 * 10 9 8 12 12 H 1.08000 * 119.99581 * 5.06825 * 11 10 9 13 13 C 1.38635 * 120.00520 * 185.05739 * 11 10 9 14 14 N 1.31574 * 119.99586 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00334 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47030 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47174 * 120.00070 * 15 13 11 18 18 H 1.48497 * 109.47279 * 240.00255 * 15 13 11 19 19 C 1.38072 * 120.33029 * 0.04992 * 9 8 7 20 20 C 1.39916 * 119.47428 * 359.96335 * 19 9 8 21 21 H 1.09005 * 109.47126 * 270.02587 * 1 2 3 22 22 H 1.09009 * 109.47001 * 30.02333 * 1 2 3 23 23 H 1.08991 * 109.47478 * 150.02281 * 1 2 3 24 24 H 1.07997 * 119.95225 * 359.72682 * 7 6 4 25 25 H 1.07994 * 119.62598 * 179.97438 * 8 7 6 26 26 H 0.97002 * 119.99834 * 180.02562 * 14 13 11 27 27 H 1.08009 * 120.26465 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2745 1.0522 0.0000 4 7 3.6189 0.6664 0.0006 5 1 4.3777 1.2706 0.0011 6 6 3.6922 -0.7032 0.0016 7 6 4.7499 -1.6101 0.0020 8 6 4.5008 -2.9517 0.0035 9 6 3.1914 -3.4344 0.0053 10 8 2.9649 -4.7733 0.0073 11 6 1.6841 -5.1774 0.1246 12 1 0.8865 -4.4492 0.1291 13 6 1.3907 -6.5275 0.2393 14 7 2.3624 -7.4145 0.2341 15 14 -0.3841 -7.0873 0.4010 16 1 -1.2804 -5.9034 0.3796 17 1 -0.7248 -7.9860 -0.7309 18 1 -0.5581 -7.8173 1.6824 19 6 2.1250 -2.5574 0.0044 20 6 2.3670 -1.1793 0.0026 21 1 -0.3634 0.0005 1.0277 22 1 -0.3633 0.8899 -0.5142 23 1 -0.3634 -0.8901 -0.5134 24 1 5.7683 -1.2508 -0.0029 25 1 5.3263 -3.6480 0.0034 26 1 2.1572 -8.3592 0.3140 27 1 1.1120 -2.9321 0.0054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297825.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:47 Heat of formation + Delta-G solvation = 31.536892 kcal Electronic energy + Delta-G solvation = -13852.860976 eV Core-core repulsion = 11383.790793 eV Total energy + Delta-G solvation = -2469.070183 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.10208 -39.97402 -36.88921 -34.24438 -33.96817 -31.14183 -29.90479 -28.40091 -27.26957 -23.94789 -22.87499 -20.92065 -19.98000 -19.09154 -17.92764 -17.12389 -16.18890 -16.03025 -15.70411 -15.22909 -14.93036 -14.66652 -14.14989 -13.74045 -13.55905 -13.34099 -13.20332 -12.83270 -12.33744 -12.08731 -12.04358 -11.82509 -11.15664 -10.89954 -10.58312 -9.52228 -8.45241 -8.40182 -6.06940 -0.00061 0.73226 1.40363 1.47659 1.52342 1.58060 1.87369 2.22722 2.80605 3.16944 3.50387 3.64613 3.71402 3.87774 4.32173 4.44609 4.70670 4.74972 4.80514 4.92816 5.03400 5.11145 5.24310 5.37243 5.57823 5.64189 5.94269 6.07245 6.51453 6.74039 7.04455 7.84782 8.82301 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037015 B = 0.008370 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.274514 B = 3344.349890 C = 4082.555233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.079 3.921 3 N -0.267 5.267 4 N -0.504 5.504 5 H 0.450 0.550 6 C 0.059 3.941 7 C -0.089 4.089 8 C -0.122 4.122 9 C 0.082 3.918 10 O -0.230 6.230 11 C -0.408 4.408 12 H 0.102 0.898 13 C -0.023 4.023 14 N -0.921 5.921 15 Si 1.015 2.985 16 H -0.249 1.249 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.184 4.184 20 C -0.147 4.147 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.166 0.834 25 H 0.138 0.862 26 H 0.271 0.729 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 12.412 -0.096 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 N -0.084 5.084 4 N -0.224 5.224 5 H 0.296 0.704 6 C -0.055 4.055 7 C -0.110 4.110 8 C -0.144 4.144 9 C 0.032 3.968 10 O -0.137 6.137 11 C -0.484 4.484 12 H 0.119 0.881 13 C -0.220 4.220 14 N -0.560 5.560 15 Si 0.835 3.165 16 H -0.172 1.172 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.206 4.206 20 C -0.155 4.155 21 H 0.111 0.889 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.184 0.816 25 H 0.156 0.844 26 H 0.080 0.920 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.226 13.293 -0.106 13.350 hybrid contribution -0.026 -1.170 0.060 1.172 sum -1.252 12.123 -0.045 12.187 Atomic orbital electron populations 1.20332 0.83765 1.04504 1.04363 1.23951 0.98080 0.87912 0.99902 1.76272 0.88212 1.23575 1.20297 1.45550 1.05330 1.02907 1.68611 0.70363 1.18799 0.95545 0.85528 1.05585 1.19743 0.98081 0.89694 1.03524 1.20215 0.94185 0.95738 1.04225 1.19574 0.94625 0.84480 0.98138 1.83955 1.29947 1.17566 1.82217 1.21817 0.81539 0.93096 1.51930 0.88119 1.26511 1.04881 0.94471 0.96111 1.70192 1.34459 1.02227 1.49108 0.84572 0.74618 0.79003 0.78343 1.17225 1.19571 1.19597 1.20456 0.99223 0.90822 1.10059 1.19782 0.92997 0.93392 1.09322 0.88914 0.88785 0.89910 0.81636 0.84432 0.91993 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 10.48 71.23 0.75 -0.97 15 2 C 0.08 2.58 7.43 44.79 0.33 2.92 15 3 N -0.27 -8.48 12.55 -43.68 -0.55 -9.03 15 4 N -0.50 -14.68 7.37 -51.44 -0.38 -15.06 15 5 H 0.45 9.41 8.96 -213.47 -1.91 7.50 15 6 C 0.06 2.04 7.33 39.21 0.29 2.33 15 7 C -0.09 -2.86 10.01 22.12 0.22 -2.64 15 8 C -0.12 -4.87 9.90 22.17 0.22 -4.65 15 9 C 0.08 4.00 6.64 22.55 0.15 4.15 15 10 O -0.23 -13.45 9.75 -23.16 -0.23 -13.68 15 11 C -0.41 -23.25 9.48 67.91 0.64 -22.61 15 12 H 0.10 5.28 5.19 -2.91 -0.02 5.27 15 13 C -0.02 -1.26 5.49 84.83 0.47 -0.79 15 14 N -0.92 -55.71 13.67 21.61 0.30 -55.41 15 15 Si 1.01 42.17 29.55 68.60 2.03 44.20 15 16 H -0.25 -9.48 7.11 99.48 0.71 -8.77 15 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 19 C -0.18 -8.14 9.22 22.64 0.21 -7.93 15 20 C -0.15 -5.69 6.33 -20.24 -0.13 -5.82 15 21 H 0.09 1.96 8.14 -2.38 -0.02 1.94 15 22 H 0.09 1.85 8.14 -2.38 -0.02 1.83 15 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.17 3.76 8.06 -2.91 -0.02 3.73 15 25 H 0.14 5.10 8.06 -2.91 -0.02 5.08 15 26 H 0.27 15.02 8.31 -92.71 -0.77 14.25 15 27 H 0.13 5.60 5.62 -2.91 -0.02 5.58 15 Total: -1.00 -70.56 245.16 3.62 -66.94 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.70 Total: 18.06 kcal Atomic # 6 Polarization: -39.17 SS G_CDS: 3.15 Total: -36.03 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -0.63 Total: -79.50 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.23 Total: -13.68 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -70.56 3.62 -66.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297825.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.479 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds