Wall clock time and date at job start Mon Mar 30 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.54859 * 2 1 4 4 H 1.07998 * 119.99779 * 125.36500 * 3 2 1 5 5 C 1.37872 * 120.00025 * 305.36244 * 3 2 1 6 6 N 1.31512 * 120.00049 * 148.87610 * 5 3 2 7 7 Si 1.86803 * 119.99968 * 328.87238 * 5 3 2 8 8 H 1.48507 * 109.47169 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47027 * 300.00233 * 7 5 3 10 10 H 1.48494 * 109.47317 * 60.00200 * 7 5 3 11 11 C 1.53042 * 109.62622 * 239.75771 * 2 1 3 12 12 C 1.52588 * 109.98620 * 303.74258 * 11 2 1 13 13 C 1.52586 * 110.64415 * 290.01570 * 12 11 2 14 14 C 1.53036 * 109.98396 * 69.99172 * 13 12 11 15 15 S 1.81668 * 109.54981 * 120.19385 * 2 1 3 16 16 O 1.42102 * 108.66478 * 179.97438 * 15 2 1 17 17 O 1.42106 * 108.66233 * 311.32753 * 15 2 1 18 18 H 1.09004 * 109.47178 * 66.37686 * 1 2 3 19 19 H 1.08998 * 109.47253 * 186.38058 * 1 2 3 20 20 H 1.09002 * 109.46884 * 306.37918 * 1 2 3 21 21 H 0.96996 * 120.00047 * 356.31114 * 6 5 3 22 22 H 1.09001 * 109.38279 * 63.90488 * 11 2 1 23 23 H 1.08996 * 109.37871 * 183.58674 * 11 2 1 24 24 H 1.08998 * 109.23828 * 169.71440 * 12 11 2 25 25 H 1.09001 * 109.20628 * 50.29695 * 12 11 2 26 26 H 1.09002 * 109.38498 * 309.82784 * 13 12 11 27 27 H 1.09000 * 109.37930 * 190.14668 * 13 12 11 28 28 H 1.09001 * 109.54413 * 176.50019 * 14 13 12 29 29 H 1.08996 * 109.55540 * 56.20549 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 1 2.7251 1.7478 0.7627 5 6 1.6137 2.3010 -0.9737 6 7 1.5092 3.5830 -0.6999 7 14 1.1926 1.6734 -2.6820 8 1 0.7707 2.8117 -3.5375 9 1 2.3867 1.0225 -3.2785 10 1 0.0863 0.6873 -2.5884 11 6 2.0441 -0.7260 -1.2453 12 6 1.4690 -2.1383 -1.3003 13 6 2.0754 -3.0091 -0.2038 14 6 1.5650 -2.5563 1.1660 15 16 2.1379 -0.8610 1.4797 16 8 3.5588 -0.8505 1.4604 17 8 1.4523 -0.3523 2.6157 18 1 -0.3634 0.4118 -0.9416 19 1 -0.3634 -1.0213 0.1142 20 1 -0.3633 0.6096 0.8274 21 1 1.6761 3.9017 0.2009 22 1 1.7396 -0.1764 -2.1360 23 1 3.1321 -0.7796 -1.2094 24 1 1.6904 -2.5787 -2.2724 25 1 0.3884 -2.0910 -1.1651 26 1 3.1616 -2.9223 -0.2321 27 1 1.7927 -4.0487 -0.3697 28 1 1.9530 -3.2210 1.9378 29 1 0.4753 -2.5807 1.1756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:19 Heat of formation + Delta-G solvation = -72.839783 kcal Electronic energy + Delta-G solvation = -14197.967985 eV Core-core repulsion = 11827.522890 eV Total energy + Delta-G solvation = -2370.445095 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.55217 -36.11244 -35.11342 -33.81518 -31.48469 -28.57455 -25.48827 -24.24508 -21.75213 -20.33462 -17.94264 -17.34033 -16.10764 -15.53548 -14.98140 -14.60271 -14.34789 -13.52442 -13.34053 -12.75905 -12.53197 -12.36820 -12.00252 -11.62754 -11.22919 -11.16898 -11.07438 -11.00296 -10.50809 -10.38060 -10.16243 -9.87678 -9.84313 -9.30750 -8.65512 -8.32124 -6.76500 -4.35251 0.92295 3.19214 3.27854 3.49190 3.68689 4.30489 4.47566 4.57243 4.87341 4.96086 5.18637 5.29490 5.45519 5.51549 5.76551 5.86503 6.00325 6.03729 6.07922 6.24079 6.32967 6.44535 6.63663 6.78227 7.09357 7.53679 8.12813 8.57890 9.27855 10.60774 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.016358 C = 0.013233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.030051 B = 1711.258647 C = 2115.337932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.358 4.358 3 C -0.615 4.615 4 H 0.073 0.927 5 C 0.063 3.937 6 N -0.865 5.865 7 Si 1.044 2.956 8 H -0.293 1.293 9 H -0.280 1.280 10 H -0.271 1.271 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.101 4.101 14 C -0.624 4.624 15 S 2.406 3.594 16 O -0.954 6.954 17 O -0.959 6.959 18 H 0.074 0.926 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.278 0.722 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -11.828 -2.110 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.454 4.454 3 C -0.652 4.652 4 H 0.091 0.909 5 C -0.149 4.149 6 N -0.494 5.494 7 Si 0.876 3.124 8 H -0.221 1.221 9 H -0.208 1.208 10 H -0.199 1.199 11 C -0.160 4.160 12 C -0.185 4.185 13 C -0.139 4.139 14 C -0.751 4.751 15 S 2.592 3.408 16 O -0.951 6.951 17 O -0.956 6.956 18 H 0.093 0.907 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.273 -11.035 -2.788 11.606 hybrid contribution 0.077 -0.899 0.991 1.340 sum -2.196 -11.934 -1.797 12.266 Atomic orbital electron populations 1.22180 0.93890 0.99625 1.04619 1.27121 1.01771 1.07400 1.09157 1.21058 1.34352 0.90990 1.18826 0.90945 1.25685 0.92280 0.93547 1.03401 1.70827 1.37776 1.16019 1.24825 0.84227 0.77078 0.74775 0.76360 1.22090 1.20790 1.19854 1.22008 1.01593 0.93114 0.99262 1.21849 1.01732 0.96049 0.98823 1.21161 1.01401 1.00509 0.90824 1.30413 1.11972 1.26719 1.05952 1.08773 0.75985 0.76998 0.79092 1.93456 1.28121 1.85721 1.87841 1.93461 1.76102 1.77193 1.48846 0.90719 0.94309 0.91215 0.91112 0.91251 0.90199 0.90987 0.90687 0.90277 0.90776 0.86423 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 7.25 37.16 0.27 -2.64 15 2 C -0.36 -7.93 0.52 -91.75 -0.05 -7.98 15 3 C -0.62 -16.64 8.41 -34.44 -0.29 -16.93 15 4 H 0.07 2.15 7.96 -52.49 -0.42 1.74 15 5 C 0.06 1.72 5.10 -17.82 -0.09 1.63 15 6 N -0.87 -25.16 13.70 55.43 0.76 -24.40 15 7 Si 1.04 23.56 23.66 -169.99 -4.02 19.54 15 8 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 9 H -0.28 -5.95 6.82 56.52 0.39 -5.56 15 10 H -0.27 -5.40 5.53 56.52 0.31 -5.09 15 11 C -0.12 -2.35 4.06 -26.92 -0.11 -2.46 15 12 C -0.15 -2.17 5.47 -27.15 -0.15 -2.32 15 13 C -0.10 -1.38 5.73 -26.92 -0.15 -1.53 15 14 C -0.62 -9.34 5.95 37.18 0.22 -9.12 15 15 S 2.41 50.84 4.15 -107.50 -0.45 50.39 15 16 O -0.95 -22.73 17.92 -57.80 -1.04 -23.77 15 17 O -0.96 -23.04 17.88 -57.80 -1.03 -24.07 15 18 H 0.07 1.50 4.69 -51.93 -0.24 1.26 15 19 H 0.04 0.61 5.12 -51.93 -0.27 0.34 15 20 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 21 H 0.28 8.10 8.72 -40.82 -0.36 7.74 15 22 H 0.07 1.38 2.31 -51.93 -0.12 1.26 15 23 H 0.08 1.55 8.01 -51.93 -0.42 1.14 15 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.07 1.03 6.00 -51.93 -0.31 0.71 15 26 H 0.08 1.10 8.01 -51.93 -0.42 0.68 15 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 28 H 0.12 1.51 8.14 -51.93 -0.42 1.09 15 29 H 0.13 1.63 7.10 -51.93 -0.37 1.26 15 LS Contribution 229.74 15.07 3.46 3.46 Total: -1.00 -31.93 229.74 -6.17 -38.10 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.51 Total: 2.10 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: -0.35 Total: -41.35 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.76 Total: -24.40 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -2.07 Total: -47.84 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.02 Total: 19.54 kcal Atomic # 16 Polarization: 50.84 SS G_CDS: -0.45 Total: 50.39 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.93 -6.17 -38.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.742 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds