Wall clock time and date at job start Mon Mar 30 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.54859 * 2 1 4 4 H 1.07998 * 119.99779 * 125.36500 * 3 2 1 5 5 C 1.37872 * 120.00025 * 305.36244 * 3 2 1 6 6 N 1.31512 * 120.00049 * 148.87610 * 5 3 2 7 7 Si 1.86803 * 119.99968 * 328.87238 * 5 3 2 8 8 H 1.48507 * 109.47169 * 180.02562 * 7 5 3 9 9 H 1.48500 * 109.47027 * 300.00233 * 7 5 3 10 10 H 1.48494 * 109.47317 * 60.00200 * 7 5 3 11 11 C 1.53042 * 109.62622 * 239.75771 * 2 1 3 12 12 C 1.52588 * 109.98620 * 303.74258 * 11 2 1 13 13 C 1.52586 * 110.64415 * 290.01570 * 12 11 2 14 14 C 1.53036 * 109.98396 * 69.99172 * 13 12 11 15 15 S 1.81668 * 109.54981 * 120.19385 * 2 1 3 16 16 O 1.42102 * 108.66478 * 179.97438 * 15 2 1 17 17 O 1.42106 * 108.66233 * 311.32753 * 15 2 1 18 18 H 1.09004 * 109.47178 * 66.37686 * 1 2 3 19 19 H 1.08998 * 109.47253 * 186.38058 * 1 2 3 20 20 H 1.09002 * 109.46884 * 306.37918 * 1 2 3 21 21 H 0.96996 * 120.00047 * 356.31114 * 6 5 3 22 22 H 1.09001 * 109.38279 * 63.90488 * 11 2 1 23 23 H 1.08996 * 109.37871 * 183.58674 * 11 2 1 24 24 H 1.08998 * 109.23828 * 169.71440 * 12 11 2 25 25 H 1.09001 * 109.20628 * 50.29695 * 12 11 2 26 26 H 1.09002 * 109.38498 * 309.82784 * 13 12 11 27 27 H 1.09000 * 109.37930 * 190.14668 * 13 12 11 28 28 H 1.09001 * 109.54413 * 176.50019 * 14 13 12 29 29 H 1.08996 * 109.55540 * 56.20549 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0343 1.4201 0.0000 4 1 2.7251 1.7478 0.7627 5 6 1.6137 2.3010 -0.9737 6 7 1.5092 3.5830 -0.6999 7 14 1.1926 1.6734 -2.6820 8 1 0.7707 2.8117 -3.5375 9 1 2.3867 1.0225 -3.2785 10 1 0.0863 0.6873 -2.5884 11 6 2.0441 -0.7260 -1.2453 12 6 1.4690 -2.1383 -1.3003 13 6 2.0754 -3.0091 -0.2038 14 6 1.5650 -2.5563 1.1660 15 16 2.1379 -0.8610 1.4797 16 8 3.5588 -0.8505 1.4604 17 8 1.4523 -0.3523 2.6157 18 1 -0.3634 0.4118 -0.9416 19 1 -0.3634 -1.0213 0.1142 20 1 -0.3633 0.6096 0.8274 21 1 1.6761 3.9017 0.2009 22 1 1.7396 -0.1764 -2.1360 23 1 3.1321 -0.7796 -1.2094 24 1 1.6904 -2.5787 -2.2724 25 1 0.3884 -2.0910 -1.1651 26 1 3.1616 -2.9223 -0.2321 27 1 1.7927 -4.0487 -0.3697 28 1 1.9530 -3.2210 1.9378 29 1 0.4753 -2.5807 1.1756 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:19 Heat of formation + Delta-G solvation = -99.322836 kcal Electronic energy + Delta-G solvation = -14199.116376 eV Core-core repulsion = 11827.522890 eV Total energy + Delta-G solvation = -2371.593486 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.98854 -37.86409 -36.86100 -35.48122 -33.25747 -29.93920 -27.22927 -25.73620 -23.45045 -21.63180 -19.78250 -19.11675 -17.61643 -17.21305 -16.60489 -16.07656 -15.91019 -14.89006 -14.71385 -14.64862 -14.09904 -13.99903 -13.50801 -13.03782 -13.02685 -12.89482 -12.52795 -12.35884 -12.06364 -11.99085 -11.71318 -11.42418 -11.32432 -11.02791 -10.39146 -10.24084 -8.92498 -6.51823 -0.66995 1.38552 1.49728 1.72297 2.11027 2.43315 2.80050 2.98981 3.21139 3.78888 3.86230 4.06271 4.07817 4.20990 4.42695 4.54737 4.63005 4.83277 4.90214 4.96704 5.09634 5.18815 5.25352 5.34618 5.60152 5.65536 5.89396 6.33869 7.20794 8.41594 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035750 B = 0.016358 C = 0.013233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.030051 B = 1711.258647 C = 2115.337932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.376 4.376 3 C -0.630 4.630 4 H 0.015 0.985 5 C 0.012 3.988 6 N -0.905 5.905 7 Si 1.080 2.920 8 H -0.306 1.306 9 H -0.259 1.259 10 H -0.216 1.216 11 C -0.125 4.125 12 C -0.146 4.146 13 C -0.106 4.106 14 C -0.580 4.580 15 S 2.378 3.622 16 O -1.000 7.000 17 O -1.006 7.006 18 H 0.075 0.925 19 H 0.094 0.906 20 H 0.042 0.958 21 H 0.258 0.742 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.151 0.849 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 -16.612 -4.106 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.471 4.471 3 C -0.667 4.667 4 H 0.034 0.966 5 C -0.192 4.192 6 N -0.536 5.536 7 Si 0.903 3.097 8 H -0.234 1.234 9 H -0.186 1.186 10 H -0.141 1.141 11 C -0.164 4.164 12 C -0.182 4.182 13 C -0.145 4.145 14 C -0.713 4.713 15 S 2.571 3.429 16 O -0.997 6.997 17 O -1.004 7.004 18 H 0.094 0.906 19 H 0.112 0.888 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.050 -15.763 -4.751 16.955 hybrid contribution 0.714 0.518 1.731 1.943 sum -3.336 -15.246 -3.020 15.896 Atomic orbital electron populations 1.22155 0.91922 1.02618 1.03620 1.27164 1.03224 1.04883 1.11865 1.21171 1.33425 0.94833 1.17238 0.96641 1.27302 0.91540 0.92947 1.07432 1.70977 1.41423 1.17657 1.23566 0.83901 0.79525 0.75396 0.70905 1.23426 1.18563 1.14076 1.21986 1.01144 0.96417 0.96843 1.21913 1.02631 0.92425 1.01276 1.21375 1.01196 1.03032 0.88857 1.30068 1.14102 1.18666 1.08487 1.08961 0.75194 0.80569 0.78184 1.93396 1.30688 1.87621 1.87989 1.93399 1.76283 1.80224 1.50452 0.90615 0.88768 0.93897 0.93302 0.91592 0.91631 0.87427 0.88498 0.90916 0.85493 0.83122 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 7.25 71.98 0.52 -4.92 15 2 C -0.38 -16.36 0.52 -11.53 -0.01 -16.37 15 3 C -0.63 -36.04 8.41 25.60 0.22 -35.82 15 4 H 0.02 1.02 7.96 -2.91 -0.02 0.99 15 5 C 0.01 0.66 5.10 84.65 0.43 1.09 15 6 N -0.91 -56.17 13.70 21.44 0.29 -55.87 15 7 Si 1.08 46.53 23.66 68.60 1.62 48.15 15 8 H -0.31 -13.72 7.11 99.48 0.71 -13.01 15 9 H -0.26 -10.21 6.82 99.48 0.68 -9.53 15 10 H -0.22 -7.44 5.53 99.48 0.55 -6.89 15 11 C -0.13 -4.46 4.06 30.47 0.12 -4.34 15 12 C -0.15 -3.26 5.47 30.32 0.17 -3.09 15 13 C -0.11 -2.14 5.73 30.47 0.17 -1.97 15 14 C -0.58 -13.82 5.95 71.99 0.43 -13.39 15 15 S 2.38 99.50 4.15 -56.49 -0.23 99.26 15 16 O -1.00 -49.09 17.92 -127.40 -2.28 -51.37 15 17 O -1.01 -49.61 17.88 -127.40 -2.28 -51.89 15 18 H 0.08 2.78 4.69 -2.38 -0.01 2.77 15 19 H 0.09 2.42 5.12 -2.39 -0.01 2.41 15 20 H 0.04 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.26 16.47 8.72 -92.71 -0.81 15.66 15 22 H 0.07 2.37 2.31 -2.39 -0.01 2.37 15 23 H 0.06 2.47 8.01 -2.39 -0.02 2.45 15 24 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 25 H 0.10 1.79 6.00 -2.39 -0.01 1.78 15 26 H 0.07 1.63 8.01 -2.39 -0.02 1.61 15 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 15 28 H 0.15 2.84 8.14 -2.39 -0.02 2.83 15 29 H 0.16 2.87 7.10 -2.39 -0.02 2.85 15 Total: -1.00 -79.34 229.74 0.10 -79.24 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.93 Total: 11.30 kcal Atomic # 6 Polarization: -80.86 SS G_CDS: 2.05 Total: -78.81 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.29 Total: -55.87 kcal Atomic # 8 Polarization: -98.70 SS G_CDS: -4.56 Total: -103.26 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.62 Total: 48.15 kcal Atomic # 16 Polarization: 99.50 SS G_CDS: -0.23 Total: 99.26 kcal Total: -79.34 0.10 -79.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.088 kcal (2) G-P(sol) polarization free energy of solvation -79.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds